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P32248_CCR7 | C-C chemokine receptor type 7   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P32248 3 LGKPMKSVLVVALLVIF CCCCCCCHHHHHHHHHC c1c-4 DISO 0.0 Bad: -19.462
2 low complexity P32248 6 PMKSVLVVALLVIF CCCCHHHHHHHHHC c2-5 DISO 0.0 Bad: -26.779
3 low complexity P32248 7 MKSVLVVALLVIFQVCL CCCHHHHHHHHHCCCCC c1c-4 DISO 0.0 Medium: -33.245
4 low complexity P32248 7 MKSVLVVALLVIFQ CCCHHHHHHHHHCC c2-4 DISO 0.0 Medium: -34.343
5 low complexity P32248 8 KSVLVVALLVIFQVCL CCHHHHHHHHHCCCCC c1a-4 DISO 0.0 Weak: -30.968
6 low complexity P32248 9 SVLVVALLVIFQVCLCQ CHHHHHHHHHCCCCCCC c1c-5 DISO 0.0 Medium: -33.987
7 low complexity P32248 12 VVALLVIFQVCLCQ HHHHHHHCCCCCCC c2-5 DISO 0.0 Weak: -32.979
8 nes_TM P32248 60 FLPIMYSIICFVGLLG HHHHHHHHHHHHHHHH c1a-5 boundary boundary|7tmA_CCR7; boundary|7tm_1; 0.0 Bad: -24.167
9 nes_TM P32248 94 DTYLLNLAVADILFLLT HHHHHHHHHHHHHHHHH c1c-4 ORD middle|7tmA_CCR7; boundary|7tm_1; 0.0 Weak: -32.858
10 nes_TM P32248 94 DTYLLNLAVADILFLL HHHHHHHHHHHHHHHH c1a-4 ORD middle|7tmA_CCR7; boundary|7tm_1; 0.0 Medium: -34.378
11 nes_TM P32248 96 YLLNLAVADILFLL HHHHHHHHHHHHHH c2-5 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -31.261
12 nes_TM P32248 98 LNLAVADILFLLTLPF HHHHHHHHHHHHHHHH c1a-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -29.298
13 nes_TM P32248 98 LNLAVADILFLLTLPF HHHHHHHHHHHHHHHH c1aR-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -30.106
14 nes_TM P32248 120 KSWVFGVHFCKLIFAI CCCCCCHHHHHHHHHH c1a-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Medium: -37.749
15 nes_TM P32248 127 HFCKLIFAIYKMSFFS HHHHHHHHHHHHHHHH c1a-5 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -31.117
16 nes_TM P32248 137 KMSFFSGMLLLLCISI HHHHHHHHHHHHHHHH c1a-5 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Medium: -39.784
17 nes_TM P32248 169 ARVLLISKLSCVGIWI CCHHHHHHHHHHHHHH c1a-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -31.207 cosmic_spacer
18 nes_TM P32248 178 SCVGIWILATVLSIPE HHHHHHHHHHHHHHHH c1a-AT-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 NA cosmic_spacer
19 nes_TM P32248 178 SCVGIWILATVLSIPE HHHHHHHHHHHHHHHH c1d-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 NA cosmic_spacer
20 nes_TM P32248 180 VGIWILATVLSIPELLYS HHHHHHHHHHHHHHHHHH c4-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -23.902 cosmic_spacer
21 nes_TM P32248 209 RCSLITEHVEAFITIQV EEECCCCCHHHHHHHHH c1c-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -32.568
22 nes_TM P32248 217 VEAFITIQVAQMVIGF HHHHHHHHHHHHHHHH c1a-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -32.009 cosmic_spacer
23 nes_TM P32248 219 AFITIQVAQMVIGF HHHHHHHHHHHHHH c2-5 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -30.353 cosmic_spacer
24 nes_TM P32248 221 ITIQVAQMVIGFLVPL HHHHHHHHHHHHHHHH c1a-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -27.627 cosmic_spacer
25 low complexity P32248 228 MVIGFLVPLLAMSFCY HHHHHHHHHHHHHHHH c1a-5 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Medium: -35.659 cosmic_phi_to_LIVMF
26 nes_TM P32248 233 LVPLLAMSFCYLVIIR HHHHHHHHHHHHHHHH c1a-5 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Strong: -43.038 cosmic_spacer
27 nes_TM P32248 258 RNKAIKVIIAVVVVFIV CCHHHHHHHHHHHHHHH c1c-4 __ middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -23.22
28 nes_TM P32248 258 RNKAIKVIIAVVVVFI CCHHHHHHHHHHHHHH c1a-4 __ middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -19.946
29 low complexity P32248 260 KAIKVIIAVVVVFIVFQ HHHHHHHHHHHHHHHHH c1c-4 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Medium: -39.105 cosmic_spacer
30 low complexity P32248 261 AIKVIIAVVVVFIVFQ HHHHHHHHHHHHHHHH c1a-5 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -23.675 cosmic_spacer
31 low complexity P32248 264 VIIAVVVVFIVFQLPY HHHHHHHHHHHHHHCH c1a-5 boundary middle|7tmA_CCR7; middle|7tm_1; 0.0 Bad: -28.91 cosmic_phi_to_LIVMF
32 nes_TM P32248 280 NGVVLAQTVANFNITS HHHHHHHHHHHCCCCC c1a-4 ORD middle|7tmA_CCR7; middle|7tm_1; 0.0 Weak: -32.424 cosmic_phi_to_LIVMF
33 nes_TM P32248 320 CVNPFLYAFIGVKFRN HHCHHHHHHHCHHHHH c1a-5 boundary boundary|7tmA_CCR7; boundary|7tm_1; 0.0 Bad: -23.279 cosmic_phi_to_LIVMF
34 nes_TM P32248 329 IGVKFRNDLFKLFKDLG HCHHHHHHHHHHHHHHC c1cR-5 boundary boundary|7tmA_CCR7; boundary|7tm_1; 0.0 Bad: -28.338 cosmic_phi_to_LIVMF
35 nes_diso P32248 336 DLFKLFKDLGCLSQ HHHHHHHHHCCCCH c3-4 boundary boundary|7tmA_CCR7; boundary|7tm_1; 0.0 Weak: -32.64 cosmic_spacer Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.