P35125 | Ubiquitin carboxyl-terminal hydrolase 6

P35125_UBP6 | Ubiquitin carboxyl-terminal hydrolase 6 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	P35125	37	EPVGINSSIDRFGILH	CCCCCCCCCCCCCCCC	c1a-4	boundary		0.0	Bad: -27.549
2	nes_diso	P35125	108	PVWSVLLNIQEIKLKN	HHHHHHHCHHHHHHHC	c1a-5	boundary	boundary\|TBC;	0.0	Medium: -34.245		Medium\|
3	nes_diso	P35125	144	IDLDVRTTLRNHVFFRD	CCCCCCCCCCCCHHHHH	c1c-4	boundary	middle\|TBC;	0.0	Weak: -31.832	cosmic_spacer R153Q;	Weak\|
4	nes_ord	P35125	185	YCRDLSHITALFLLYL	CCCCHHHHHHHHHHHC	c1a-AT-4	ORD	middle\|TBC;	0.0	NA
5	nes_ord	P35125	185	YCRDLSHITALFLLYL	CCCCHHHHHHHHHHHC	c1d-4	ORD	middle\|TBC;	0.0	NA
6	nes_ord	P35125	185	YCRDLSHITALFLLY	CCCCHHHHHHHHHHH	c1b-4	ORD	middle\|TBC;	0.0	NA
7	nes_ord	P35125	188	DLSHITALFLLYLPE	CHHHHHHHHHHHCCH	c1b-5	ORD	middle\|TBC;	0.0	NA
8	nes_diso	P35125	264	SLGCLLRNLIDGISLGL	HHHHHHHHHCCCCCCCC	c1c-5	boundary	middle\|TBC;	0.0	Bad: -27.938
9	nes_diso	P35125	265	LGCLLRNLIDGISLGL	HHHHHHHHCCCCCCCC	c1a-4	boundary	middle\|TBC;	0.0	Weak: -30.681		Weak\|
10	nes_diso	P35125	268	LLRNLIDGISLGLTLRL	HHHHHCCCCCCCCCCCC	c1c-5	boundary	middle\|TBC;	0.0	Weak: -30.837		Weak\|
11	nes_diso	P35125	291	EGEQVLMPITSIALKV	CCCCCCHHHHHHHHHH	c1a-4	boundary	boundary\|TBC;	0.0	Medium: -34.465		Medium\|
12	nes_diso	P35125	293	EQVLMPITSIALKV	CCCCHHHHHHHHHH	c2-4	boundary	boundary\|TBC;	0.0	Bad: -23.988
13	nes_diso	P35125	628	LAFLLDGLHEDLNRVH	HHHHHHHHHHHHHHCC	c1aR-5	boundary	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.0	Medium: -39.698		Medium\|
14	nes_diso	P35125	631	LLDGLHEDLNRVHE	HHHHHHHHHHHCCC	c3-4	boundary	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.0	Weak: -30.224		Weak\|
15	nes_diso	P35125	685	LRSQVKCKTCGHISVRF	ECCEEECCCCCCEEEEE	c1c-AT-4	boundary	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.25	NA	cosmic_spacer R700Q;
16	nes_diso	P35125	702	DPFNFLSLPLPMDSYM	CCCCEEECCCCCCEEE	c1aR-4	boundary	middle\|UBP12; boundary\|Peptidase_C19 superfamily;	0.43	Bad: -29.175	cosmic_phi_to_LIVMF P710L;M713I;M717T;
17	nes_diso	P35125	705	NFLSLPLPMDSYMDLEI	CEEECCCCCCEEEEEEE	c1c-5	boundary	middle\|UBP12; boundary\|Peptidase_C19 superfamily;	0.25	Bad: -25.995	cosmic_phi P710L;M713I;M717T;
18	nes_beta_diso	P35125	709	LPLPMDSYMDLEITVIK	CCCCCCEEEEEEEEEEE	c1c-4	__	middle\|UBP12; boundary\|Peptidase_C19 superfamily;	0.75	NA	cosmic_phi_to_LIVMF P710L;M713I;M717T;V723M;
19	nes_beta_diso	P35125	713	MDSYMDLEITVIKLDG	CCEEEEEEEEEEECCC	c1a-4	boundary	middle\|UBP12; boundary\|Peptidase_C19 superfamily;	1.0	NA	cosmic_phi M717T;V723M;
20	nes_beta_diso	P35125	715	SYMDLEITVIKLDG	EEEEEEEEEEECCC	c2-4	boundary	middle\|UBP12; boundary\|Peptidase_C19 superfamily;	1.0	NA	cosmic_spacer M717T;V723M;
21	nes_diso	P35125	782	VQLSVSGFLCAFEIPV	CCCCCCCEEEEEEECC	c1a-4	boundary	middle\|UBP12;	0.57	NA	cosmic_spacer S785L;C791Y;P796S;P796L;
22	nes_diso	P35125	782	VQLSVSGFLCAFEIPV	CCCCCCCEEEEEEECC	c1aR-4	boundary	middle\|UBP12;	0.57	NA	cosmic_spacer S785L;C791Y;P796S;P796L;
23	nes_ord	P35125	1058	KTHCLATKKLDLWR	HHCCCCCCCCCHHC	c2-AT-4	ORD	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.0	NA	cosmic_spacer T1064A;
24	low complexity	P35125	1071	RLPPFLIIHLKR	CCCCEEEEEEEC	c2-rev	ORD	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.83	NA	cosmic_phi P1073S;
25	nes_beta_diso	P35125	1072	LPPFLIIHLKRFQFVN	CCCEEEEEEECCCCCC	c1a-4	boundary	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.86	NA	cosmic_spacer P1073S;
26	nes_beta_diso	P35125	1074	PFLIIHLKRFQFVN	CEEEEEEECCCCCC	c2-5	boundary	middle\|UBP12; middle\|Peptidase_C19 superfamily;	0.71	NA

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.