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P35222_CTNB1 | Catenin beta-1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P35222 95 RAAMFPETLDEGMQIPS HHHHCCCCCCCCCCCCC c1c-4 DISO 0.0 Medium: -33.361 cosmic_spacer Medium|
2 nes_ord P35222 233 KSGGIPALVKMLGSPVDS HCCCHHHHHHHHCCCCHH c4-4 ORD small|ARM; 0.0 Medium: -37.881 cosmic_spacer
3 nes_ord P35222 240 LVKMLGSPVDSVLFYA HHHHHCCCCHHHHHHH c1a-5 ORD small|ARM; 0.0 NA cosmic_spacer
4 nes_ord P35222 251 VLFYAITTLHNLLLHQ HHHHHHHHHHHHHCCC c1a-AT-5 ORD 0.0 NA cosmic_spacer
5 nes_ord P35222 252 LFYAITTLHNLLLHQ HHHHHHHHHHHHCCC c1b-5 ORD 0.0 NA cosmic_phi
6 nes_ord P35222 271 MAVRLAGGLQKMVALLN HHHHHCCHHHHHHHHHC c1c-4 ORD 0.0 NA cosmic_phi
7 nes_ord P35222 289 TNVKFLAITTDCLQILA CCHHHHHHHHHHHHHHH c1c-AT-4 ORD 0.0 NA cosmic_spacer
8 nes_ord P35222 290 NVKFLAITTDCLQILA CHHHHHHHHHHHHHHH c1a-AT-5 ORD 0.0 NA cosmic_spacer
9 nes_ord P35222 332 TYEKLLWTTSRVLKVLS CHHHHHHHHHHHHHHHC c1c-AT-4 ORD 0.0 NA cosmic_spacer
10 nes_ord P35222 335 KLLWTTSRVLKVLSVCS HHHHHHHHHHHHHCCCC c1c-AT-5 ORD 0.0 NA cosmic_spacer_Pro
11 nes_ord P35222 336 LLWTTSRVLKVLSVCS HHHHHHHHHHHHCCCC c1a-AT-5 ORD 0.0 NA cosmic_spacer
12 nes_ord P35222 359 EAGGMQALGLHLTD HCCHHHHHHHHCCC c2-AT-4 ORD small|ARM; 0.0 NA cosmic_spacer
13 nes_ord P35222 394 KQEGMEGLLGTLVQLLG HHHHHCHHHHHHHHHHC c1c-4 ORD 0.0 Weak: -32.114 cosmic_spacer
14 nes_ord P35222 397 GMEGLLGTLVQLLG HHCHHHHHHHHHHC c3-4 ORD 0.0 Medium: -39.469 cosmic_phi_to_LIVMF
15 nes_ord P35222 440 QVGGIEALVRTVLR HCCHHHHHHHHHHH c3-4 ORD small|Arm; 0.0 NA cosmic_spacer
16 nes_ord P35222 505 PLIKATVGLIRNLALCP HHHHHHHHHHHHHHCCH c1c-AT-5 ORD 0.0 NA cosmic_spacer
17 nes_ord P35222 506 LIKATVGLIRNLALCP HHHHHHHHHHHHHCCH c1a-AT-5 ORD 0.0 NA cosmic_spacer
18 nes_ord P35222 507 IKATVGLIRNLALCP HHHHHHHHHHHHCCH c1b-4 ORD 0.0 NA cosmic_phi_to_LIVMF
19 low complexity P35222 532 AIPRLVQLLVRA HHHHHHHHHHCC c2-rev boundary 0.0 Bad: -23.332 cosmic_spacer
20 nes_diso P35222 552 SMGGTQQQFVEGVRMEE HHCHHHHHHHCCCCHHH c1c-AT-5 boundary 0.0 NA cosmic_spacer
21 nes_diso P35222 566 MEEIVEGCTGALHILA HHHHHHHHHHHHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
22 nes_diso P35222 576 ALHILARDVHNRIVIRG HHHHHHCCHHHHHHHHH c1c-5 boundary 0.0 Medium: -33.251 cosmic_spacer Medium|
23 nes_ord P35222 585 HNRIVIRGLNTIPLFVQL HHHHHHHHCCCHHHHHHH c4-4 ORD small|Arm; 0.0 NA cosmic_phi_to_LIVMF
24 nes_ord P35222 592 GLNTIPLFVQLLYSPIEN HCCCHHHHHHHHCCCCHH c4-5 ORD small|Arm; 0.0 NA cosmic_phi_to_LIVMF
25 low complexity P35222 592 GLNTIPLFVQLLYS HCCCHHHHHHHHCC c3-4 ORD small|Arm; 0.0 NA cosmic_phi_to_LIVMF
26 nes_ord P35222 596 IPLFVQLLYSPIENIQ HHHHHHHHCCCCHHHH c1aR-5 ORD small|Arm; 0.0 NA cosmic_phi_to_LIVMF
27 nes_ord P35222 599 FVQLLYSPIENIQR HHHHHCCCCHHHHH c3-4 ORD small|Arm; 0.0 NA cosmic_phi_to_LIVMF
28 nes_diso P35222 647 RNEGVATYAAAVLFRM CCHHHHHHHHHHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.