P35240 | Merlin

P35240_MERL | Merlin ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_beta_diso	P35240	18	QPKTFTVRIVTMDA	CCCEEEEEEEECCE	c2-4	boundary	boundary\|FERM_F1_Merlin; boundary\|B41;	1.0	NA	cosmic_spacer P19R;T23A;
2	nes_ord	P35240	42	KGKDLFDLVCRTLGLRE	CHHHHHHHHHHHHCCCC	c1c-4	ORD	middle\|FERM_F1_Merlin; boundary\|B41;	0.0	NA	cosmic_phi G43E;D45N;L46R;V50A;R52G;
3	nes_ord	P35240	60	WFFGLQYTIKDTVAWLK	EECEEEEEECCCEEEEC	c1cR-5	ORD	middle\|FERM_F1_Merlin; middle\|B41;	0.62	NA	cosmic_spacer Y66C;D70E;W74C;
4	nes_ord	P35240	109	LVQEITQHLFFLQVKK	HHHHHHHHHHHHHHHH	c1a-5	ORD	boundary\|FERM_F1_Merlin; middle\|B41; boundary\|FERM_M;	0.0	NA	cosmic_spacer K123N;
5	nes_ord	P35240	115	QHLFFLQVKKQILDEK	HHHHHHHHHHHHHCCC	c1aR-4	ORD	boundary\|FERM_F1_Merlin; middle\|B41; boundary\|FERM_M;	0.0	NA	cosmic_spacer K123N;Q125H;
6	nes_ord	P35240	172	RVINLYQMTPEMWEER	HHHHHHCCCHHHHHHH	c1aR-4	ORD	middle\|B41; middle\|FERM_M;	0.0	Bad: -27.134	cosmic_phi_to_LIVMF Y177H;E182Q;E182V;M183T;M183I;E185K;E186D;
7	nes_ord	P35240	199	ARDEAEMEYLKIAQ	CHHHHHHHHHHHHC	c2-AT-4	ORD	boundary\|B41; boundary\|FERM_M; boundary\|FERM_C_ERM; boundary\|FERM_C;	0.0	NA	cosmic_spacer R200W;D201N;A211D;
8	nes_ord	P35240	212	QDLEMYGVNYFAIRN	CCHHHCCCEEEEEEC	c1b-4	ORD	boundary\|B41; boundary\|FERM_M; boundary\|FERM_C_ERM; boundary\|FERM_C;	0.43	NA	cosmic_phi_to_LIVMF E215K;E215D;M216I;V219A;V219M;Y221C;R225Q;
9	nes_beta_ord	P35240	228	KGTELLLGVDALGLHI	CCCCEEEEECCCCCCC	c1a-4	ORD	boundary\|B41; boundary\|FERM_M; boundary\|FERM_C_ERM; boundary\|FERM_C;	0.71	NA	cosmic_spacer L234I;G235R;G235E;A238V;H242Y;
10	nes_ord	P35240	230	TELLLGVDALGLHI	CCEEEEECCCCCCC	c2-4	ORD	boundary\|B41; boundary\|FERM_M; boundary\|FERM_C_ERM; boundary\|FERM_C;	0.57	NA	cosmic_phi_to_LIVMF L234I;G235R;G235E;A238V;H242Y;
11	nes_ord	P35240	232	LLLGVDALGLHIYDPE	EEEEECCCCCCCCCCC	c1aR-4	ORD	boundary\|B41; boundary\|FERM_M; boundary\|FERM_C_ERM; boundary\|FERM_C;	0.14	NA	cosmic_phi_to_LIVMF L234I;G235R;G235E;A238V;H242Y;P246L;E247K;
12	nes_ord	P35240	272	TIKPLDKKIDVFKFNS	EEEECCCCCCEEEEEC	c1a-5	ORD	middle\|FERM_C_ERM; middle\|FERM_C;	0.14	NA	cosmic_phi_to_LIVMF I273F;V282I;
13	nes_diso	P35240	286	NSSKLRVNKLILQL	ECCCHHHHHHHHHH	c2-4	boundary	boundary\|FERM_C_ERM; boundary\|FERM_C;	0.0	Bad: -24.05	cosmic_phi_to_LIVMF R291C;R291H;R291P;L297V;Q298L;
14	nes_diso	P35240	288	SKLRVNKLILQLCIGN	CCHHHHHHHHHHHHHC	c1aR-4	boundary	boundary\|FERM_C_ERM; boundary\|FERM_C;	0.0	Strong: -41.417	cosmic_spacer R291C;R291H;R291P;L297V;Q298L;	Strong\|
15	nes_diso	P35240	288	SKLRVNKLILQLCIGN	CCHHHHHHHHHHHHHC	c1a-4	boundary	boundary\|FERM_C_ERM; boundary\|FERM_C;	0.0	Strong: -43.077	cosmic_spacer R291C;R291H;R291P;L297V;Q298L;	Strong\|
16	nes_diso	P35240	427	EQKVLEAEVLALKMAE	HHHHHHHHHHHHHHHH	c1a-4	DISO	boundary\|ATP-synt_Fo_b superfamily; middle\|ERM; middle\|PV-1 superfamily;	0.0	Medium: -35.401	cosmic_spacer A433V;L436M;A441S;	Medium\|
17	nes_diso	P35240	494	DIPSFNLIGDSLSFDF	CCCCCCCCCCCCCCCC	c1d-5	DISO	middle\|ERM; boundary\|PV-1 superfamily;	0.0	Bad: -25.58	cosmic_spacer S497N;S506A;D508Y;
18	nes_diso	P35240	508	DFKDTDMKRLSMEI	CCCCCCHHHHHHHH	c2-AT-5	DISO	middle\|ERM; boundary\|PV-1 superfamily;	0.0	NA	cosmic_spacer D511H;T512S;R516W;E520D;
19	nes_diso	P35240	538	QLNELKTEIEALKLKE	HHHHHHHHHHHHHHHH	c1a-5	DISO	middle\|ERM;	0.0	Medium: -35.141	cosmic_phi N540D;E541K;L542H;K543E;T544I;	Medium\|

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.