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P35658_NU214 | Nuclear pore complex protein Nup214   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P35658 13 EMKDFQFRALKKVRIFD HCCCCEEEECCEEECCC c1c-AT-5 boundary 0.62 NA cosmic_spacer
2 nes_beta_diso P35658 15 KDFQFRALKKVRIFD CCCEEEECCEEECCC c1b-4 boundary 0.71 NA cosmic_phi_to_LIVMF
3 nes_diso P35658 48 YGLVFAGGASGLQIFP CCEEEEECCCEEEEEE c1a-AT-4 boundary 0.57 NA cosmic_spacer
4 nes_diso P35658 58 GLQIFPTKNLLIQN EEEEEEHHHHHHHC c2-AT-5 boundary 0.43 NA cosmic_spacer
5 nes_diso P35658 76 DPNKIVDKVQGLLVPM CCCCCCCCCCCEEEEC c1a-4 boundary boundary|WD40 superfamily; 0.0 Medium: -34.382 cosmic_phi_to_LIVMF Medium|
6 nes_diso P35658 87 LLVPMKFPIHHLALSC EEEECCCCCCEEEEEC c1a-5 boundary boundary|WD40 superfamily; 0.14 Bad: -18.309
7 nes_diso P35658 140 AYHKLLKDAGGMVIDM EEEEECCCCCCCEEEE c1a-AT-4 boundary middle|WD40 superfamily; 0.14 NA
8 nes_beta_diso P35658 160 TVPSMVAVCLAD CCCCEEEEEECC c2-rev boundary middle|WD40 superfamily; 0.83 NA cosmic_spacer
9 nes_diso P35658 166 AVCLADGSIAVLQVTE EEEECCCCEEEEEECC c1a-AT-5 boundary middle|WD40 superfamily; 0.43 NA cosmic_spacer
10 nes_diso P35658 171 DGSIAVLQVTETVKVCA CCCEEEEEECCCEEEEE c1c-AT-4 boundary middle|WD40 superfamily; 0.62 NA
11 nes_diso P35658 172 GSIAVLQVTETVKVCA CCEEEEEECCCEEEEE c1a-AT-4 boundary middle|WD40 superfamily; 0.57 NA
12 nes_diso P35658 172 GSIAVLQVTETVKVCA CCEEEEEECCCEEEEE c1d-4 boundary middle|WD40 superfamily; 0.57 NA
13 nes_diso P35658 245 DVLWIGTYVFAIVY EEEEECCCEEEEEE c3-4 boundary boundary|WD40 superfamily; 0.57 Bad: -25.951 cosmic_spacer
14 nes_diso P35658 362 PMGVVVDYTNQVEITI CEEEEEECCCCCCCCC c1a-AT-5 boundary 0.43 NA
15 nes_diso P35658 461 SSPAAPIATFSLLP CCCCCCCCCCCCCC c2-AT-4 DISO 0.0 NA
16 nes_diso P35658 535 AASPVAPSAASFSFGS CCCCCCCCCCCCCCCC c1a-AT-4 DISO boundary|KAR9 superfamily; 0.0 NA cosmic_spacer
17 nes_diso P35658 572 MKPSFPPSTSAVKVNL CCCCCCCCCCCCCCCC c1a-AT-4 DISO boundary|KAR9 superfamily; 0.0 NA
18 nes_diso P35658 702 VMAGIGEEIAHFQK HHHHHHHHHHHHHH c3-4 DISO boundary|KAR9 superfamily; 0.0 Bad: -28.444 cosmic_phi
19 nes_diso P35658 709 EIAHFQKELEELKA HHHHHHHHHHHHHH c3-4 DISO boundary|KAR9 superfamily; 0.0 Weak: -30.925 cosmic_phi Weak|
20 nes_diso P35658 725 SKACFQVGTSEEMKMLR HCCCCCCCCHHHHHHHH c1c-AT-4 DISO 0.0 NA cosmic_spacer
21 nes_diso P35658 743 ESDDLHTFLLEIKE HHHHHHHHHHHHHH c2-AT-4 DISO 0.0 NA cosmic_spacer
22 nes_diso P35658 810 QLQEIRRLHQYVKFAV HHHHHHHHHHHHHHHH c1d-5 DISO 0.0 Weak: -30.131 cosmic_spacer Weak|
23 nes_diso P35658 821 VKFAVQDVNDVLDLEW HHHHHHHHHHHHHHHH c1aR-4 DISO 0.0 Bad: -26.415 cosmic_spacer
24 nes_diso P35658 874 RLNHLVDSLQQLRLYK HHHHHHHHHHHHHHHC c1a-5 DISO 0.0 Medium: -39.617 Medium|
25 nes_diso P35658 905 SIHSFDSDLESLCN CCCCCCCCHHHHHH c3-4 DISO 0.0 Medium: -33.013 cosmic_spacer Medium|
26 nes_diso P35658 1326 LAGETLGSFSGLRVGQ CCCCCCCCCCCCCCCC c1a-AT-4 DISO middle|KAR9 superfamily; 0.0 NA cosmic_spacer
27 nes_diso P35658 1327 AGETLGSFSGLRVGQ CCCCCCCCCCCCCCC c1b-4 DISO middle|KAR9 superfamily; 0.0 NA cosmic_spacer
28 nes_diso P35658 1405 TSSTAVFGSLPVTS CCCCCCCCCCCCCC c2-AT-4 DISO boundary|KAR9 superfamily; 0.0 NA
29 nes_diso P35658 2062 GFSGFGSGTGGFSFGS CCCCCCCCCCCCCCCC c1a-AT-5 DISO boundary|Gly_rich superfamily; 0.0 NA
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.