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P38398_BRCA1 | Breast cancer type 1 susceptibility protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: NESdb:10 validNES:P014
  • PMIDs: 10991937;15811849
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L86A/I90A, F93A/L95A
  • Mutation(bind): Unknown
  • Functional seq: 81QLVEELLKIICAFQLDTGL99
  • Sites: 22-30; 81-99


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P38398 4 SALRVEEVQNVINAMQ CCCCHHHHHHHHHHHH c1aR-5 DISO 0.0 Bad: -29.568
2 nes_diso P38398 7 RVEEVQNVINAMQK CHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -27.896
3 nes_diso P38398 10 EVQNVINAMQKILE
            ++		 HHHHHHHHHHHHHC c3-4 DISO 0.0 Strong: -40.191 Strong|
4 ExpNES_diso P38398 24 CPICLELIKEPVSTKC
+++++++         		 CCCHHHHCCCCEECCC c1aR-4 DISO small|RING-HC_BRCA1; 0.0 Medium: -35.542 cosmic_spacer Medium|
5 nes_diso P38398 38 KCDHIFCKFCMLKLLN CCCCHHHHHHHHHHHH c1a-4 DISO small|RING-HC_BRCA1; small|zf-C3HC4; 0.0 Medium: -35.658 cosmic_spacer Medium|
6 ExpNES_diso P38398 75 ESTRFSQLVEELLKIIC
      +++++*+++*+		 CCHHHHHHHHHHHHHHH c1c-4 DISO 0.0 Medium: -36.6 cosmic_phi_to_LIVMF Medium|
7 ExpNES_diso P38398 82 LVEELLKIICAFQLDT
++++*+++*++*+*++		 HHHHHHHHHHHHCCCC c1a-5 DISO 0.0 Medium: -35.835 cosmic_phi_to_LIVMF Medium|
8 nes_diso P38398 408 KVADVLDVLNEVDE HHHHHHHCCCCCCC c3-4 DISO middle|BRCT_assoc; 0.0 Bad: -24.167
9 nes_diso P38398 470 SLPNLSHVTENLIIGA CCCCCCCCCHHHHCCC c1a-AT-5 DISO middle|BRCT_assoc; 0.0 NA
10 nes_diso P38398 470 SLPNLSHVTENLIIGA CCCCCCCCCHHHHCCC c1d-5 DISO middle|BRCT_assoc; 0.0 NA
11 nes_diso P38398 583 KAEPISSSISNMELEL CCCCCCCCCCCCHHHC c1a-4 DISO 0.0 Bad: -20.236
12 nes_diso P38398 616 STRHIHALELVVSR CCCCEECEECCCCC c2-AT-4 DISO 0.57 NA
13 nes_diso P38398 775 TDYGTQESISLLEVST CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
14 nes_diso P38398 913 NESNIKPVQTVNITA CCCCCCCCCCCCCCC c1b-4 DISO 0.0 Bad: -24.171
15 nes_diso P38398 1076 RGPKLNAMLRLGVLQ CCCCCCHHCCCCCCC c1b-4 DISO 0.0 Strong: -41.792 cosmic_spacer Strong|
16 nes_diso P38398 1082 AMLRLGVLQPEVYKQS HHCCCCCCCHHHHCCC c1aR-4 DISO 0.0 Bad: -28.869
17 nes_diso P38398 1222 ELPCFQHLLFGK CCHHHHHHHCCC c2-rev DISO 0.0 Bad: -22.324
18 nes_diso P38398 1403 NLIKLQQEMAELEA HHHHHHHHHHHHHH c3-4 DISO 0.0 Medium: -38.021 Medium|
19 nes_diso P38398 1468 NPEGLSADKFEVSA CCCCCCHHHCCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
20 nes_diso P38398 1589 RVGNIPSSTSALKVPQ CCCCCCCCCCCCCCCC c1a-AT-5 DISO 0.0 NA
21 nes_diso P38398 1676 LTNLITEETTHVVMKT EECCCCCCCCCEEECC c1a-AT-4 boundary middle|BRCT; middle|BRCT_BRCA1_rpt1; 0.0 NA cosmic_spacer
22 nes_diso P38398 1787 CGASVVKELSSFTLGT CCCEEECCCCCCCCCC c1a-4 DISO middle|BRCT; middle|BRCT_BRCA1_rpt2; 0.29 Medium: -33.483 cosmic_spacer Medium|
23 nes_diso P38398 1796 SSFTLGTGVHPIVVVQP CCCCCCCCCEEEEEECC c1cR-4 boundary middle|BRCT; middle|BRCT_BRCA1_rpt2; 0.38 Weak: -32.918 Weak|
24 nes_diso P38398 1830 APVVTREWVLDSVALYQ CCEEECCHHHHHHHHCE c1c-AT-4 boundary boundary|BRCT; boundary|BRCT_BRCA1_rpt2; 0.12 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.