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P40189_IL6RB | Interleukin-6 receptor subunit beta   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P40189 1 XMLTLQTWLVQALFIFL CCHHHHHHHHHHHHHHH c1c-5-Nt boundary boundary|Lep_receptor_Ig; 0.0 Medium: -33.454 Medium|
2 nes_diso P40189 36 PVVQLHSNFTAVCVLK CEEECCCCEEEEEEEC c1a-5 boundary boundary|Lep_receptor_Ig; 0.43 Medium: -34.274 cosmic_spacer Medium|
3 nes_beta_diso P40189 61 NANYIVWKTNHFTIPK CHHEEEEEECCEECCH c1a-AT-4 __ middle|Lep_receptor_Ig; 0.71 NA
4 nes_beta_ord P40189 77 EQYTIINRTASSVTFTD HHEEEECCEEEEEEEEC c1c-AT-4 ORD boundary|Lep_receptor_Ig; 0.75 NA
5 nes_beta_ord P40189 78 QYTIINRTASSVTFTD HEEEECCEEEEEEEEC c1a-AT-4 ORD boundary|Lep_receptor_Ig; 0.71 NA
6 nes_ord P40189 86 ASSVTFTDIASLNIQL EEEEEEECCCCCCEEE c1a-AT-4 ORD boundary|Lep_receptor_Ig; boundary|FN3 superfamily; 0.43 NA
7 nes_ord P40189 87 SSVTFTDIASLNIQLTC EEEEEECCCCCCEEEEE c1c-AT-4 ORD boundary|Lep_receptor_Ig; boundary|FN3 superfamily; 0.25 NA
8 nes_ord P40189 87 SSVTFTDIASLNIQL EEEEEECCCCCCEEE c1b-4 ORD boundary|Lep_receptor_Ig; boundary|FN3 superfamily; 0.29 NA
9 nes_ord P40189 107 TFGQLEQNVYGITIIS EECCCCCEEEEEEEEE c1a-5 ORD boundary|Lep_receptor_Ig; boundary|FN3 superfamily; 0.57 NA
10 nes_diso P40189 185 DYSTVYFVNIEVWV CCCCCCCCEEEEEE c2-4 boundary boundary|FN3 superfamily; 0.29 NA cosmic_phi_to_LIVMF
11 nes_beta_diso P40189 187 STVYFVNIEVWVEAEN CCCCCCEEEEEEEEEE c1aR-4 boundary boundary|FN3 superfamily; boundary|FN3; boundary|FN3; 0.71 NA cosmic_phi_to_LIVMF
12 nes_ord P40189 200 AENALGKVTSDHINFDP EEECCCCEECCCEEECC c1c-AT-4 ORD boundary|FN3 superfamily; boundary|FN3; boundary|FN3; 0.25 NA cosmic_spacer
13 nes_diso P40189 241 KLTWTNPSIKSVIILKY EEEEECCCCCCCEEEEE c1c-AT-5 boundary boundary|FN3 superfamily; boundary|FN3; boundary|FN3; 0.12 NA cosmic_spacer
14 nes_diso P40189 241 KLTWTNPSIKSVIILK EEEEECCCCCCCEEEE c1a-AT-5 boundary boundary|FN3 superfamily; boundary|FN3; boundary|FN3; 0.14 NA cosmic_spacer
15 nes_diso P40189 288 DLKPFTEYVFRIRC CCCCCCEEEEEEEE c3-4 boundary boundary|FN3; boundary|FN3; 0.57 NA
16 nes_ord P40189 378 QNYTVNATKLTVNL EEEEECCCEEEEEC c2-AT-4 ORD 0.57 NA
17 nes_ord P40189 575 TEYTLSSLTSDTLYMVR CEEECCCCCCCCEEEEE c1c-AT-4 ORD boundary|FN3; boundary|FN3; 0.0 NA cosmic_spacer
18 nes_ord P40189 578 TLSSLTSDTLYMVRMAA ECCCCCCCCEEEEEEEE c1c-AT-5 ORD boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
19 nes_ord P40189 579 LSSLTSDTLYMVRMAA CCCCCCCCEEEEEEEE c1a-AT-4 ORD boundary|FN3; boundary|FN3; 0.43 NA cosmic_spacer
20 nes_TM P40189 610 TPKFAQGEIEAIVVPV CCCCCCCCCHHHHHHH c1a-AT-4 boundary boundary|FN3; boundary|FN3; 0.0 NA cosmic_spacer
21 low complexity P40189 617 EIEAIVVPVCLAFLLTT CCHHHHHHHHHHHHHHH c1c-5 boundary boundary|FN3; boundary|FN3; 0.0 Bad: -29.293 cosmic_spacer
22 nes_TM P40189 626 CLAFLLTTLLGVLFCF HHHHHHHHHHHHHHHH c1a-5 boundary boundary|FN3; boundary|FN3; 0.0 Medium: -33.98 cosmic_phi_to_LIVMF
23 nes_diso P40189 684 SDGNFTDVSVVEIEA CCCCCCCCEEEEECC c1b-4 DISO 0.43 Bad: -23.856 cosmic_phi_to_LIVMF
24 nes_diso P40189 700 DKKPFPEDLKSLDLFK CCCCCCHHHCCCCCCC c1a-4 DISO 0.0 Bad: -21.357 cosmic_spacer
25 nes_beta_diso P40189 881 TEGQVERFETVGMEA CCCCEEEEEECCCCC c1b-4 DISO 0.86 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.