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P41229_KDM5C | Lysine-specific demethylase 5C   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P41229 52 WQPPFAVEVDNFRFTP CCCCCCCCCCCCCEEC c1a-4 boundary boundary|ARID_KDM5C_5D; 0.0 Bad: -16.782 cosmic_spacer
2 nes_diso P41229 54 PPFAVEVDNFRFTP CCCCCCCCCCCEEC c2-4 boundary boundary|ARID_KDM5C_5D; 0.0 Bad: -24.144 cosmic_spacer
3 nes_diso P41229 101 KIPNVERRILDLYS CCCCCCCCEEEHHH c3-4 boundary middle|ARID_KDM5C_5D; 0.29 Bad: -27.818 cosmic_spacer
4 nes_diso P41229 108 RILDLYSLSKIVVEEG CEEEHHHCHHHHHHHC c1aR-4 boundary middle|ARID_KDM5C_5D; 0.0 Weak: -30.019 cosmic_spacer Weak|
5 nes_diso P41229 237 QIYGAGPKMMGLGLMA CCCCCCCCCCCCCCCC c1a-AT-5 DISO 0.0 NA cosmic_spacer
6 nes_diso P41229 269 PTVVVKEELGGDVKVES CCEEECCCCCCCCCCCC c1c-4 DISO 0.12 Bad: -25.236 cosmic_spacer
7 nes_diso P41229 405 KADYFNMPVHMVPTELVE HHHHCCCCCCCCCHHHHH c4-4 boundary 0.0 Bad: -20.709 cosmic_spacer
8 nes_diso P41229 424 EFWRLVNSIEEDVTVEY HHHHHHCCCCCCEEEEE c1c-5 boundary 0.0 Medium: -33.221 cosmic_spacer Medium|
9 nes_diso P41229 486 VLCHINADISGMKVPW CCCCCCCCCCCCCCCE c1a-5 boundary boundary|JmjC; 0.0 Bad: -23.566 cosmic_spacer
10 nes_beta_diso P41229 500 PWLYVGMVFSAFCWHI CEEEEEECEEEEEEEC c1aR-4 boundary boundary|JmjC; 0.86 NA cosmic_spacer
11 nes_beta_diso P41229 504 VGMVFSAFCWHIEDHW EEECEEEEEEECCCCC c1aR-4 boundary boundary|JmjC; 1.0 Bad: -20.947 cosmic_spacer
12 nes_diso P41229 541 AAEHLEEVMKKLTPELFD HHHHHHHHHHHHCHHHHH c4-4 boundary middle|JmjC; 0.0 Medium: -34.144 cosmic_phi Medium|
13 nes_diso P41229 658 LDLNLAAAVHKEMFIMV CCHHHHHHHHHHHHHHH c1c-4 boundary 0.0 Medium: -35.528 cosmic_spacer Medium|
14 nes_diso P41229 752 TLDELPAMLHKLKVRA CHHHHHHHHHHHHHHH c1a-5 boundary boundary|zf-C5HC2; boundary|PLU-1; 0.0 Bad: -28.096 cosmic_phi_to_LIVMF
15 nes_diso P41229 766 RAESFDTWANKVRVAL HHHCHHHHHHHHHHHH c1a-AT-4 boundary boundary|zf-C5HC2; boundary|PLU-1; 0.0 NA cosmic_spacer
16 nes_diso P41229 818 CLSEAEACVSRALGLVS HHHHHHHHHHHHHHHHC c1c-AT-5 boundary middle|PLU-1; 0.0 NA
17 nes_diso P41229 842 RVAGLQMTLTELRA CCCCCCCCHHHHHH c3-4 boundary middle|PLU-1; 0.0 Medium: -39.289 cosmic_phi Medium|
18 nes_diso P41229 846 LQMTLTELRAFLDQMN CCCCHHHHHHHHHHHH c1aR-5 boundary middle|PLU-1; 0.0 Weak: -30.883 cosmic_phi Weak|
19 nes_diso P41229 849 TLTELRAFLDQMNN CHHHHHHHHHHHHC c3-4 boundary middle|PLU-1; 0.0 Bad: -29.839 cosmic_phi
20 nes_diso P41229 852 ELRAFLDQMNNLPCAMHQ HHHHHHHHHHCCCCCCCC c4-5 boundary middle|PLU-1; 0.0 Bad: -28.374 cosmic_phi
21 nes_diso P41229 852 ELRAFLDQMNNLPC HHHHHHHHHHCCCC c3-4 boundary middle|PLU-1; 0.0 Weak: -30.814 cosmic_phi Weak|
22 nes_diso P41229 859 QMNNLPCAMHQIGD HHHCCCCCCCCHHH c3-4 __ middle|PLU-1; 0.0 Medium: -35.05 cosmic_spacer Medium|
23 nes_diso P41229 869 QIGDVKGVLEQVEA CHHHHHHHHHHHHH c3-4 boundary middle|PLU-1; 0.0 Bad: -28.563 cosmic_spacer
24 nes_diso P41229 942 ARRGTLAVMRGLLVAG CCCCCHHHHHHHHHHH c1a-AT-4 boundary middle|PLU-1; 0.0 NA cosmic_spacer
25 nes_diso P41229 943 RRGTLAVMRGLLVAG CCCCHHHHHHHHHHH c1b-4 boundary middle|PLU-1; 0.0 NA cosmic_phi_to_LIVMF
26 nes_diso P41229 965 AVDKAQAELQELLTIAE HHHHHHHHHHHHHHHHH c1c-AT-5 boundary middle|PLU-1; 0.0 NA cosmic_spacer
27 nes_diso P41229 1044 HYPCLDDLEGLVAVGR CCCCHHHHHHHHHHHH c1d-4 boundary middle|PLU-1; 0.0 Strong: -41.973 cosmic_phi_to_LIVMF Strong|
28 nes_diso P41229 1061 LPVGLEELRQLELQV CCCCHHHHHHHHHHH c1b-4 DISO middle|PLU-1; 0.0 Medium: -35.361 cosmic_phi Medium|
29 nes_diso P41229 1251 RRPRLETILALLVALQR CCCCHHHHHHHHHHHHC c1c-4 boundary boundary|PHD2_KDM5C_5D; boundary|PHD; 0.0 Weak: -32.063 cosmic_phi Weak|
30 nes_diso P41229 1254 RLETILALLVALQR CHHHHHHHHHHHHC c3-4 boundary boundary|PHD2_KDM5C_5D; boundary|PHD; 0.0 Bad: -24.46 cosmic_spacer
31 nes_diso P41229 1257 TILALLVALQRLPVRLPE HHHHHHHHHHCCCCCCCH c4-5 boundary boundary|PHD2_KDM5C_5D; boundary|PHD; 0.0 Medium: -36.945 cosmic_phi_to_LIVMF Medium|
32 nes_diso P41229 1261 LLVALQRLPVRLPEGE HHHHHHCCCCCCCHHH c1aR-4 boundary boundary|PHD2_KDM5C_5D; boundary|PHD; 0.0 Bad: -19.532 cosmic_phi_to_LIVMF
33 nes_diso P41229 1300 DVTALLGRLAELRQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -39.216 cosmic_phi Medium|
34 nes_diso P41229 1380 LLPQLTGPVLELPE CCCCCCCCCCCCCH c3-4 DISO 0.0 Bad: -14.577
35 nes_diso P41229 1391 LPEATRAPLEELMMEG CCHHCCCHHHHHHHHC c1a-AT-4 DISO 0.0 NA cosmic_spacer
36 nes_diso P41229 1400 EELMMEGDLLEVTLDE HHHHHHCCCEECCCHH c1a-4 DISO 0.29 Medium: -35.631 cosmic_phi_to_LIVMF Medium|
37 nes_diso P41229 1427 QPPDLERIRTLLELEK CCCCHHHHHHHHHHHH c1d-4 DISO 0.0 Bad: -23.822 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.