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P42702_LIFR | Leukemia inhibitory factor receptor   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P42702 25 NFQWLLSTFILLYLMN HHHHHHHHHHHHHHHH c1a-5 boundary 0.0 Medium: -35.813 cosmic_phi_to_LIVMF Medium|
2 nes_diso P42702 31 STFILLYLMNQVNSQK HHHHHHHHHHHHHCCC c1aR-4 boundary 0.0 Weak: -30.852 Weak|
3 nes_diso P42702 49 APHDLKCVTNNLQVWN CCCCCEEEECCCCEEE c1a-AT-4 boundary 0.57 NA
4 nes_diso P42702 49 APHDLKCVTNNLQVWN CCCCCEEEECCCCEEE c1d-4 boundary 0.57 NA
5 nes_diso P42702 114 SLHDFGSSTSKFTLNE EECCCCCCCCEEEEEE c1a-AT-5 boundary 0.14 NA cosmic_spacer
6 nes_diso P42702 144 LSADFSTSTLYLKW EEECCCCCEEEEEE c2-AT-4 boundary 0.29 NA
7 nes_ord P42702 207 SDMPLECAIHFVEIRC CCCCCCCCCCEEEEEE c1a-4 ORD 0.14 Bad: -27.41 cosmic_spacer
8 nes_beta_diso P42702 216 HFVEIRCYIDNLHFSG CEEEEEEEEECCCCCC c1a-5 boundary 0.86 NA cosmic_phi_to_LIVMF
9 nes_diso P42702 256 PQDKVILVGSDITFCC CCCCEEECCCCEEEEE c1d-4 boundary 0.43 Bad: -29.772 cosmic_phi_to_LIVMF
10 nes_beta_ord P42702 293 DGENVAIKIRNISVSA CCEEEEEEEEEEECCC c1a-4 ORD 1.0 NA cosmic_phi
11 nes_beta_ord P42702 295 ENVAIKIRNISVSA EEEEEEEEEEECCC c2-4 ORD 1.0 NA cosmic_spacer
12 nes_ord P42702 314 VVFTTEDNIFGTVIFAG EEEECCCCEEEEEEEEC c1c-AT-5 ORD 0.5 NA cosmic_spacer
13 nes_ord P42702 451 LSWHLPGNFAKINFLC EEEECCCCCCCEEEEE c1a-4 ORD boundary|FN3; boundary|FN3; 0.0 Medium: -37.731 cosmic_spacer
14 nes_diso P42702 495 ALDKLNPYTLYTFRIRC EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
15 nes_diso P42702 632 KIEQVVGMGKGILLTW EEEEEECCCCEEEEEE c1d-5 boundary boundary|FN3; boundary|FN3; 0.43 NA cosmic_spacer
16 nes_diso P42702 687 ESDEFRPGIRYNFFLYG EHHHCCCCCEEEEEEEE c1c-4 boundary boundary|FN3; 0.38 Bad: -26.111 cosmic_spacer
17 nes_diso P42702 711 LLRSMIGYIEELAPIVAP EEEEEEEEHHHCCCCCCC c4-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
18 nes_beta_diso P42702 711 LLRSMIGYIEELAP EEEEEEEEHHHCCC c3-4 boundary boundary|FN3; boundary|FN3; 0.71 NA cosmic_spacer
19 nes_diso P42702 797 RIADLQGKTSYHLVLRA EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
20 nes_TM P42702 830 KENSVGLIIAILIPV CCCCCCHHHHHHHHH c1b-4 ORD boundary|FN3; boundary|FN3; 0.0 NA cosmic_phi
21 low complexity P42702 836 LIIAILIPVAVAVIVGV HHHHHHHHHHHHHHHHH c1c-5 ORD boundary|FN3; boundary|FN3; 0.0 Bad: -29.638 cosmic_spacer
22 low complexity P42702 838 IAILIPVAVAVIVGVVT HHHHHHHHHHHHHHHHH c1c-4 ORD boundary|FN3; boundary|FN3; 0.0 Weak: -32.393 cosmic_phi
23 nes_TM P42702 845 AVAVIVGVVTSILC HHHHHHHHHHHHHH c3-4 ORD boundary|FN3; boundary|FN3; 0.0 NA cosmic_spacer
24 nes_beta_diso P42702 966 AGGTAQVIYIDVQS CCCCCEEEEEEEEE c2-AT-4 DISO 0.71 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.