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P43146_DCC | Netrin receptor DCC   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 low complexity P43146 9 WVPKLAFVLFGA EECCHHHHHHEE c2-rev DISO boundary|Ig1_Neogenin; 0.0 Bad: -22.794 cosmic_spacer
2 nes_diso P43146 11 PKLAFVLFGASLFSAH CCHHHHHHEEEEEEEE c1aR-4 boundary boundary|Ig1_Neogenin; 0.43 NA cosmic_spacer
3 nes_diso P43146 23 FSAHLQVTGFQIKA EEEEEEECCCCCEE c2-4 boundary boundary|Ig1_Neogenin; 0.57 NA cosmic_phi_to_LIVMF
4 nes_beta_diso P43146 123 DSGSIISRTAKVAVAG CCCEEEEEEEEEEEEC c1a-AT-4 boundary boundary|Ig1_Neogenin; boundary|IGc2; 1.0 NA cosmic_spacer
5 nes_diso P43146 145 QTESVTAFMGDTVLLKC CCCCCEEECCCCEEEEC c1c-4 boundary boundary|Ig1_Neogenin; boundary|IGc2; 0.38 NA cosmic_spacer
6 nes_beta_ord P43146 315 KNENISASAELTVLVPP CCCEEEEEEEEEECCCC c1c-AT-4 ORD boundary|I-set; boundary|Ig superfamily; 1.0 NA cosmic_spacer_Pro
7 nes_diso P43146 451 PPAEAKGNIQTFTVFF CCCCCCCCCEEEEEEE c1a-AT-4 boundary boundary|Ig superfamily; middle|FN3; middle|FN3; 0.29 NA cosmic_spacer
8 nes_diso P43146 488 TVGNLKPEAMYTFRVVA EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
9 nes_beta_ord P43146 577 EVDGLSYKLEGLKK EECCCEEEEECCCC c3-4 ORD boundary|FN3; middle|FN3; 0.71 NA cosmic_phi
10 nes_diso P43146 584 KLEGLKKFTEYSLRFLA EEECCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
11 nes_diso P43146 604 YGPGVSTDDITVVT CCCCCCCCCEEEEC c2-AT-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.14 NA cosmic_spacer
12 nes_beta_diso P43146 690 SQYSFQVSAMTVNG CEEEEEEEEEECCC c2-4 boundary boundary|FN3; boundary|FN3; 1.0 NA cosmic_phi_to_LIVMF
13 nes_diso P43146 730 SSLHVRPQTNCIIMSW CEEEEECCCCEEEEEE c1a-AT-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.43 NA cosmic_spacer
14 nes_diso P43146 844 MLPPVGVQAVALTH CCCCCCCEEEECCC c2-5 boundary boundary|FN3; boundary|FN3; boundary|FN3; 0.43 NA cosmic_phi_to_LIVMF
15 nes_diso P43146 906 TATGLKPNTMYEFSVMV EECCCCCCCEEEEEEEE c1c-AT-4 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
16 nes_ord P43146 969 PPLEANGKITAYILFYT CCCCCCCCCEEEEEEEE c1c-AT-4 ORD boundary|FN3; middle|FN3; middle|FN3; 0.38 NA cosmic_spacer
17 nes_ord P43146 979 AYILFYTLDKNIPIDD EEEEEEEECCCCCCCC c1aR-4 ORD middle|FN3; middle|FN3; 0.57 NA cosmic_spacer
18 nes_diso P43146 1001 SGDRLTHQIMDLNLDT ECCCCEEEECCCCCCC c1a-4 boundary boundary|FN3; middle|FN3; 0.57 NA cosmic_spacer
19 nes_diso P43146 1008 QIMDLNLDTMYYFRIQA EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
20 nes_diso P43146 1010 MDLNLDTMYYFRIQA CCCCCCCEEEEEEEE c1b-4 boundary boundary|FN3; boundary|FN3; 0.57 NA cosmic_phi
21 nes_diso P43146 1033 LSDPILFRTLKVEH CCCCEEEECCCCCC c2-4 boundary boundary|FN3; boundary|FN3; 0.57 NA cosmic_phi
22 nes_TM P43146 1094 KNSNLLVIIVVTVGVIT CCCCCCCCCCCCCCCCH c1c-4 DISO 0.0 NA cosmic_phi_to_LIVMF
23 nes_TM P43146 1095 NSNLLVIIVVTVGVIT CCCCCCCCCCCCCCCH c1a-4 DISO 0.0 NA cosmic_phi_to_LIVMF
24 low complexity P43146 1095 NSNLLVIIVVTVGV CCCCCCCCCCCCCC c2-4 DISO 0.0 NA cosmic_spacer
25 low complexity P43146 1098 LLVIIVVTVGVITVLV CCCCCCCCCCCCHHHH c1a-5 DISO 0.0 NA cosmic_spacer
26 low complexity P43146 1100 VIIVVTVGVITVLVVV CCCCCCCCCCHHHHHH c1a-5 DISO 0.0 NA cosmic_phi_to_LIVMF
27 low complexity P43146 1102 IVVTVGVITVLVVV CCCCCCCCHHHHHH c2-5 DISO 0.0 NA cosmic_phi_to_LIVMF
28 low complexity P43146 1104 VTVGVITVLVVVIVAV CCCCCCHHHHHHCCHH c1a-4 DISO 0.0 NA cosmic_phi_to_LIVMF
29 low complexity P43146 1105 TVGVITVLVVVIVAVIC CCCCCHHHHHHCCHHHH c1c-5 DISO 0.0 NA cosmic_phi_to_LIVMF
30 low complexity P43146 1105 TVGVITVLVVVIVA CCCCCHHHHHHCCH c2-5 DISO 0.0 NA cosmic_spacer
31 low complexity P43146 1105 TVGVITVLVVVIVA CCCCCHHHHHHCCH c3-4 DISO 0.0 NA cosmic_spacer
32 low complexity P43146 1108 VITVLVVVIVAVIC CCHHHHHHCCHHHH c2-5 DISO 0.0 NA cosmic_phi_to_LIVMF
33 low complexity P43146 1108 VITVLVVVIVAVIC CCHHHHHHCCHHHH c3-4 DISO 0.0 NA cosmic_spacer
34 nes_diso P43146 1242 SNNPAVVSAIPVPT CCCCCEEECCCCCC c2-AT-4 DISO middle|Neogenin_C; 0.43 NA cosmic_spacer
35 nes_diso P43146 1346 ANPLLPPPMSAIEPKVPY CCCCCCCCCCCCCCCCCC c4-4 DISO middle|Neogenin_C; 0.0 Bad: -13.512 cosmic_phi_to_LIVMF
36 nes_diso P43146 1375 PKTHVKTASLGLAG CCCCCCCCCCCCCC c2-AT-4 DISO middle|Neogenin_C; 0.0 NA cosmic_spacer
37 nes_diso P43146 1428 QMASLEGLMKQLNA HHHHHHHHHHHHHH c3-4 DISO boundary|Neogenin_C; 0.0 Strong: -48.746 cosmic_phi_to_LIVMF Strong|
38 nes_diso P43146 1431 SLEGLMKQLNAITG HHHHHHHHHHHHHC c3-4 DISO boundary|Neogenin_C; 0.0 Weak: -30.242 cosmic_spacer Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.