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P43246_MSH2 | DNA mismatch repair protein Msh2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P43246 15 AEVGFVRFFQGMPEKP HHHHHHHHHHCCCCCC c1aR-4 boundary boundary|MutS; 0.0 Medium: -38.181 cosmic_phi Medium|
2 nes_diso P43246 71 GAKNLQSVVLSKMNFES CCCCCCEEEECHHHHHH c1c-4 boundary middle|MutS; 0.5 NA cosmic_spacer
3 nes_diso P43246 74 NLQSVVLSKMNFES CCCEEEECHHHHHH c2-5 boundary middle|MutS; 0.57 NA cosmic_phi_to_LIVMF
4 nes_diso P43246 81 SKMNFESFVKDLLLVRQ CHHHHHHHHHHHHHHCC c1c-4 boundary middle|MutS; 0.0 Bad: -29.688 cosmic_phi_to_LIVMF
5 nes_diso P43246 81 SKMNFESFVKDLLLVR CHHHHHHHHHHHHHHC c1aR-5 boundary middle|MutS; 0.0 Medium: -37.557 cosmic_spacer Medium|
6 nes_diso P43246 81 SKMNFESFVKDLLLVR CHHHHHHHHHHHHHHC c1a-4 boundary middle|MutS; 0.0 Medium: -33.263 cosmic_phi_to_LIVMF Medium|
7 nes_diso P43246 84 NFESFVKDLLLVRQ HHHHHHHHHHHHCC c3-4 boundary middle|MutS; 0.0 Medium: -34.213 cosmic_spacer Medium|
8 nes_diso P43246 124 SPGNLSQFEDILFGN CCCCCCCCHHHCCCC c1b-4 boundary middle|MutS; 0.0 Medium: -34.382 cosmic_spacer Medium|
9 nes_beta_diso P43246 137 GNNDMSASIGVVGVKM CCCCEEEEEEEEEEEE c1a-4 boundary middle|MutS; 1.0 NA cosmic_phi_to_LIVMF
10 nes_beta_diso P43246 141 MSASIGVVGVKMSA EEEEEEEEEEEEEC c2-4 boundary middle|MutS; 1.0 Bad: -26.95 cosmic_phi_to_LIVMF
11 nes_beta_diso P43246 144 SIGVVGVKMSAVDG EEEEEEEEEECCCC c3-4 boundary middle|MutS; 1.0 Bad: -27.422 cosmic_spacer
12 nes_diso P43246 162 GVGYVDSIQRKLGLCE EEEEEECCCCEEEEEE c1d-5 boundary middle|MutS; 0.43 Weak: -30.156 cosmic_spacer Weak|
13 nes_ord P43246 183 QFSNLEALLIQIGP HHHHHHHHHHHHCC c3-4 ORD middle|MutS; 0.0 NA cosmic_spacer
14 nes_diso P43246 253 MNSAVLPEMENQVAVSS CCCCCCHHHCHHHHHHH c1c-4 boundary middle|MutS; 0.0 Bad: -27.487 cosmic_phi_to_LIVMF
15 nes_diso P43246 266 AVSSLSAVIKFLELLS HHHHHHHHHHHHHHHC c1a-5 boundary middle|MutS; 0.0 Medium: -33.227 cosmic_phi_to_LIVMF Medium|
16 nes_ord P43246 285 NFGQFELTTFDFSQ CCCCCCCEEECHHH c2-5 ORD middle|MutS; boundary|MutS_III; 0.43 NA cosmic_spacer
17 nes_diso P43246 298 QYMKLDIAAVRALNLFQ HCEEECHHHHHHHHHCC c1c-AT-4 boundary middle|MutS; boundary|MutS_III; 0.12 NA cosmic_spacer
18 nes_diso P43246 300 MKLDIAAVRALNLFQ EEECHHHHHHHHHCC c1b-4 boundary middle|MutS; boundary|MutS_III; 0.0 NA cosmic_phi
19 nes_ord P43246 403 DCYRLYQGINQLPNVIQA HHHHHHHHHHHHHHHHHH c4-4 ORD middle|MutS; middle|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
20 nes_ord P43246 410 GINQLPNVIQALEK HHHHHHHHHHHHHH c3-4 ORD middle|MutS; middle|MutS_III; 0.0 NA cosmic_phi
21 nes_ord P43246 429 QKLLLAVFVTPLTDLR HHHHHHHHCCHHHHHH c1aR-5 ORD middle|MutS; middle|MutS_III; 0.0 Bad: -28.088 cosmic_spacer
22 nes_diso P43246 432 LLAVFVTPLTDLRS HHHHHCCHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Bad: -27.806 cosmic_spacer
23 nes_diso P43246 439 PLTDLRSDFSKFQE HHHHHHHHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Medium: -35.944 cosmic_phi_to_LIVMF Medium|
24 nes_diso P43246 446 DFSKFQEMIETTLDMDQ HHHHHHHHHHHHCCCCC c1c-5 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -31.673 cosmic_phi Weak|
25 nes_diso P43246 477 NLSELREIMNDLEK HHHHHHHHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Bad: -27.425 cosmic_phi_to_LIVMF
26 nes_ord P43246 492 MQSTLISAARDLGLDP HHHHHHHHHHHHCCCC c1a-AT-4 ORD middle|MutS; middle|MutS_III; 0.0 NA cosmic_spacer
27 nes_ord P43246 591 PMQTLNDVLAQLDA HHHHHHHHHHHHHH c3-4 ORD middle|MutS; boundary|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
28 nes_ord P43246 594 TLNDVLAQLDAVVSFAH HHHHHHHHHHHHHHHHH c1c-5 ORD middle|MutS; boundary|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
29 nes_ord P43246 594 TLNDVLAQLDAVVS HHHHHHHHHHHHHH c3-4 ORD middle|MutS; boundary|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
30 nes_ord P43246 636 ASRHACVEVQDEIAFIP ECCCCCEEEECCCCCCC c1c-AT-4 ORD middle|MutS; boundary|MutS_III; boundary|ABC_MSH2_euk; 0.5 NA
31 nes_diso P43246 640 ACVEVQDEIAFIPNDVYF CCEEEECCCCCCCCCEEE c4-4 boundary middle|MutS; boundary|MutS_III; boundary|ABC_MSH2_euk; 0.12 Bad: -24.36
32 nes_diso P43246 683 GVIVLMAQIGCFVP HHHHHHHCCCCCCC c3-4 boundary middle|MutS; middle|ABC_MSH2_euk; 0.0 Weak: -30.383 cosmic_spacer Weak|
33 nes_diso P43246 684 VIVLMAQIGCFVPCES HHHHHHCCCCCCCCCC c1aR-4 boundary middle|MutS; middle|ABC_MSH2_euk; 0.0 Weak: -30.816 cosmic_phi Weak|
34 nes_diso P43246 701 EVSIVDCILARVGA CCCCCEEECCCCCC c3-4 boundary middle|MutS; middle|ABC_MSH2_euk; 0.43 Medium: -34.472 cosmic_spacer Medium|
35 nes_diso P43246 718 QLKGVSTFMAEMLE CCCCCCCCHHHHHH c3-4 boundary middle|MutS; middle|ABC_MSH2_euk; 0.0 Medium: -33.374 cosmic_spacer Medium|
36 nes_diso P43246 732 TASILRSATKDSLIIID HHHHHHHCCCCCEEEEE c1c-AT-4 boundary middle|MutS; middle|ABC_MSH2_euk; 0.0 NA cosmic_spacer
37 nes_ord P43246 766 ISEYIATKIGAFCMFA HHHHHHHHHCCCEEEE c1a-4 ORD middle|MutS; middle|ABC_MSH2_euk; 0.0 Weak: -31.375 cosmic_spacer
38 nes_ord P43246 776 AFCMFATHFHELTA CCEEEECCHHHHHH c3-4 ORD middle|MutS; middle|ABC_MSH2_euk; 0.43 NA cosmic_spacer
39 nes_ord P43246 793 QIPTVNNLHVTA HCCCCEEEEEEE c2-rev ORD middle|MutS; middle|ABC_MSH2_euk; 0.67 NA cosmic_phi
40 nes_beta_ord P43246 809 ETLTMLYQVKKGVCDQS CEEEEEEEEEECCCCCC c1cR-4 ORD middle|MutS; middle|ABC_MSH2_euk; 0.88 Bad: -28.6 cosmic_phi
41 nes_diso P43246 904 ITIKLKQLKAEVIAKN HHHHHHHHHHHHHHCC c1aR-4 boundary 0.0 Bad: -27.286 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.