P43405 | Tyrosine-protein kinase SYK

P43405_KSYK | Tyrosine-protein kinase SYK ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	P43405	26	EDYLVQGGMSDGLYLLR	HHHHHHCCCCCCCEEEE	c1c-4	boundary	boundary\|SH2_N-SH2_Zap70_Syk_like;	0.0	Medium: -37.891	cosmic_spacer D27N;Y28D;L29V;G33S;G33D;G37R;	Medium\|
2	nes_diso	P43405	180	QIVLIGSKTNGKFLIRA	HHHHHCCCCCCCEEEEE	c1c-AT-5	boundary	boundary\|SH2_C-SH2_Syk_like;	0.0	NA	cosmic_spacer N189S;
3	nes_diso	P43405	244	YSYKADGLLRVLTVPC	CCCCCCCCEEECCCCC	c1a-AT-4	boundary	boundary\|SH2_C-SH2_Syk_like;	0.43	NA	cosmic_spacer Y246S;
4	nes_ord	P43405	388	GYYQMKKVVKTVAVKI	EEEECCCCEEEEEEEE	c1a-4	ORD	boundary\|Pkinase_Tyr; boundary\|PTKc_Syk;	0.43	Bad: -29.174	cosmic_phi_to_LIVMF Y389C;M392I;M392L;K397E;K397T;V401M;
5	nes_ord	P43405	437	GICEAESWMLVMEMAE	EEECCCCHHHHHHHHH	c1a-AT-5	ORD	middle\|Pkinase_Tyr; middle\|PTKc_Syk;	0.0	NA	cosmic_spacer E440K;A441D;A441V;E442K;M448L;E449K;A451V;
6	nes_ord	P43405	467	KDKNIIELVHQVSMGM	CHHHHHHHHHHHHHHH	c1a-4	ORD	middle\|Pkinase_Tyr; middle\|PTKc_Syk;	0.0	NA	cosmic_phi_to_LIVMF I471M;M480I;G481S;
7	nes_ord	P43405	474	LVHQVSMGMKYLEE	HHHHHHHHHHHHHH	c3-4	ORD	middle\|Pkinase_Tyr; middle\|PTKc_Syk;	0.0	NA	cosmic_spacer M480I;G481S;
8	nes_ord	P43405	491	VHRDLAARNVLLVT	CCHHHHHHHEEEEC	c2-AT-4	ORD	middle\|Pkinase_Tyr; middle\|PTKc_Syk;	0.14	NA	cosmic_spacer H492Q;N499H;
9	nes_beta_ord	P43405	504	TQHYAKISDFGLSK	CCCEEEEECCHHHH	c2-AT-4	ORD	middle\|Pkinase_Tyr; middle\|PTKc_Syk;	0.71	NA	cosmic_spacer S511N;D512N;G514R;
10	nes_diso	P43405	615	NRPGFAAVELRLRN	HCCCHHHHHHHHHH	c2-AT-4	terminal	boundary\|Pkinase_Tyr; boundary\|PTKc_Syk;	0.0	NA	cosmic_spacer R616M;V622A;E623G;R625W;R627H;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.