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P46100_ATRX | Transcriptional regulator ATRX   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P46100 10 KLNTLVQKLHDFLA HHHHHHHHHHHHHH c3-4 DISO 0.0 Strong: -41.76 cosmic_phi_to_LIVMF Strong|
2 nes_diso P46100 391 QLKAFKSVLADIKK HHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -25.329 cosmic_phi
3 nes_diso P46100 509 TSEDLDMDIVSVPS CCHHCCCCCCCCCC c2-4 DISO 0.0 Weak: -32.219 cosmic_spacer Weak|
4 nes_diso P46100 513 LDMDIVSVPSSVPEDI CCCCCCCCCCCCCHHH c1aR-4 DISO 0.0 Bad: -22.674 cosmic_phi
5 nes_diso P46100 524 VPEDIFENLETAMEVQS CCHHHHHHHHHHHHHHC c1c-4 DISO 0.0 Bad: -28.489 cosmic_spacer
6 nes_diso P46100 574 IKSKTTAKVTKELYVKL CCCCCCCHHHHHHHHCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
7 nes_diso P46100 733 EMLAILKEVSRMSH HHHHHHHHHHHHCC c3-4 DISO 0.0 Bad: -27.892 cosmic_phi_to_LIVMF
8 nes_diso P46100 891 AEGTVDKDTTIMELRD CCCCCCCCCCHHHHHH c1a-AT-4 DISO 0.0 NA cosmic_spacer
9 nes_diso P46100 1024 EICHFPKGIKQIKN HHCCCCCCCCCCCC c3-4 DISO 0.0 Bad: -23.832
10 nes_diso P46100 1222 DEQKIKPVTENLVLSS CHHHCCCCHHHHCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
11 nes_diso P46100 1222 DEQKIKPVTENLVLSS CHHHCCCCHHHHCCCC c1d-4 DISO 0.0 NA cosmic_phi
12 nes_diso P46100 1273 KKMLLEEIKANLSSDE HHHHHHHHHHHCCCCC c1aR-4 DISO 0.0 Bad: -23.655 cosmic_phi_to_LIVMF
13 nes_diso P46100 1525 DASPTKCPITTKLVLDE CCCCCCCCCCCCEEECC c1c-AT-4 boundary boundary|DEXHc_ATRX; 0.0 NA cosmic_spacer
14 nes_diso P46100 1545 TKEPLVQVHRNMVIKL CCCCCEEECHHHHHHC c1d-4 boundary boundary|DEXHc_ATRX; boundary|SNF2_N; 0.43 Bad: -24.548 cosmic_phi
15 nes_diso P46100 1587 GSGCILAHCMGLGK CCCCCCCCCCCCCC c2-AT-4 boundary middle|DEXHc_ATRX; middle|SNF2_N; 0.0 NA cosmic_spacer
16 nes_diso P46100 1594 HCMGLGKTLQVVSFLH CCCCCCCHHHHHHHHH c1a-4 boundary middle|DEXHc_ATRX; middle|SNF2_N; 0.0 Medium: -35.094 cosmic_phi_to_LIVMF Medium|
17 nes_diso P46100 1600 KTLQVVSFLHTVLLCD CHHHHHHHHHHHHHCC c1a-4 boundary middle|DEXHc_ATRX; middle|SNF2_N; 0.0 Medium: -36.732 cosmic_phi Medium|
18 nes_diso P46100 1600 KTLQVVSFLHTVLLCD CHHHHHHHHHHHHHCC c1aR-4 boundary middle|DEXHc_ATRX; middle|SNF2_N; 0.0 Medium: -33.925 cosmic_spacer Medium|
19 nes_diso P46100 1677 GVMIIGYEMYRNLAQGR CEEEEEHHHHHHHHCCC c1cR-4 boundary middle|DEXHc_ATRX; middle|SNF2_N; 0.25 Bad: -28.671 cosmic_spacer
20 nes_diso P46100 1786 NGQCADSTMVDVRVMK CCCCCCCCHHHHHHHH c1a-AT-4 boundary boundary|DEXHc_ATRX; middle|SNF2_N; 0.0 NA cosmic_spacer
21 nes_diso P46100 1835 LAVRMTSIQCKLYQYY EEECCCHHHHHHHHHH c1aR-4 boundary boundary|DEXHc_ATRX; middle|SNF2_N; 0.0 Bad: -27.882 cosmic_phi_to_LIVMF
22 nes_diso P46100 1864 GRGKAGAKLFQDFQMLS CCCCCCCCHHHHHHHHH c1c-AT-4 boundary boundary|SNF2_N; 0.0 NA cosmic_spacer
23 nes_diso P46100 2016 HSGKMVLLFEILRMAE HCHHHHHHHHHHHHHH c1a-4 boundary boundary|SF2_C_SNF; boundary|Helicase_C; 0.0 Strong: -45.196 cosmic_phi Strong|
24 low complexity P46100 2018 GKMVLLFEILRMAE HHHHHHHHHHHHHH c2-4 boundary boundary|SF2_C_SNF; boundary|Helicase_C; 0.0 Bad: -25.682 cosmic_phi
25 nes_diso P46100 2022 LLFEILRMAEEIGDKV HHHHHHHHHHHHCCEE c1aR-4 boundary boundary|SF2_C_SNF; boundary|Helicase_C; 0.0 Bad: -24.276 cosmic_spacer_Pro
26 nes_diso P46100 2025 EILRMAEEIGDKVLVFS HHHHHHHHHCCEEEEEC c1c-5 boundary boundary|SF2_C_SNF; boundary|Helicase_C; 0.12 Medium: -33.622 cosmic_phi_to_LIVMF Medium|
27 nes_diso P46100 2036 KVLVFSQSLISLDLIE EEEEECCCHHHHHHHH c1a-5 boundary boundary|SF2_C_SNF; boundary|Helicase_C; 0.14 Medium: -34.582 cosmic_phi_to_LIVMF Medium|
28 nes_diso P46100 2043 SLISLDLIEDFLELAS CHHHHHHHHHHHHHHH c1aR-4 boundary middle|SF2_C_SNF; middle|Helicase_C; 0.0 Medium: -33.101 cosmic_spacer Medium|
29 nes_ord P46100 2111 RLFIISTKAGSLGINL EEEEEECCCCCCCCCC c1a-AT-5 ORD middle|SF2_C_SNF; middle|Helicase_C; 0.29 NA cosmic_spacer
30 nes_ord P46100 2120 GSLGINLVAANRVIIFD CCCCCCCCCCCEEEEEC c1c-AT-4 ORD middle|SF2_C_SNF; boundary|Helicase_C; 0.12 NA cosmic_spacer
31 nes_diso P46100 2232 PKDTILAELLQIHK CHHHHHHHHHHHCH c2-AT-4 boundary 0.0 NA cosmic_spacer
32 nes_diso P46100 2334 KVVEATNSVTAVRIQP CCHHCCCCCCCCCCCC c1a-AT-5 DISO 0.0 NA cosmic_spacer
33 nes_diso P46100 2346 RIQPLEDIISAVWK CCCCHHHHHHHHHH c3-4 DISO 0.0 Bad: -16.632 cosmic_phi_to_LIVMF
34 nes_diso P46100 2363 NLSEAQVQALALSR CCCHHHHHHHHHHH c2-AT-5 DISO 0.0 NA cosmic_spacer
35 nes_diso P46100 2370 QALALSRQASQELDVKR HHHHHHHHHHHHHHHHH c1c-AT-4 DISO 0.0 NA cosmic_spacer
36 nes_diso P46100 2397 KQQMLISCVQRILMNR HHHHHHHHHHHHHHCH c1a-4 DISO 0.0 Medium: -35.14 cosmic_phi_to_LIVMF Medium|
37 nes_diso P46100 2398 QQMLISCVQRILMNRR HHHHHHHHHHHHHCHH c1aR-4 DISO 0.0 Bad: -29.699 cosmic_phi
38 nes_diso P46100 2427 TYQQATLGHLMMPK HHHHHHHCCCCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
39 nes_diso P46100 2452 QQIDMRGMYQPVAGGM CCCCCCCCCCCCCCCC c1aR-4 DISO 0.0 Bad: -23.478 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.