HOME Exp-NES Cancer-NES Human-NES Documentation Contact
P51532_SMCA4 | Transcription activator BRG1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P51532 68 NMHQMHKPMESMHE HHHHCHHCHHHHHH c3-4 DISO 0.0 Bad: -28.808 cosmic_spacer
2 nes_diso P51532 398 TKATIELKALRLLN HHHHHHHHHHHHHH c2-4 DISO 0.0 Bad: -27.876 cosmic_spacer
3 nes_diso P51532 405 KALRLLNFQRQLRQEV HHHHHHHHHHHHHHHH c1aR-4 DISO 0.0 Medium: -33.2 cosmic_spacer Medium|
4 nes_diso P51532 408 RLLNFQRQLRQEVVVCM HHHHHHHHHHHHHHHHH c1c-5 DISO 0.0 Medium: -36.213 cosmic_spacer Medium|
5 nes_diso P51532 611 QMSDLPVKVIHVES CCCCCCCEEEECCC c2-5 DISO 0.43 Medium: -33.775 cosmic_phi_to_LIVMF Medium|
6 nes_diso P51532 611 QMSDLPVKVIHVES CCCCCCCEEEECCC c3-4 DISO 0.43 Medium: -34.367 cosmic_phi_to_LIVMF Medium|
7 nes_ord P51532 769 YNNNLNGILADEMGLGK HHCCCCCCCHHHHCCCH c1c-4 ORD middle|DEXHc_SMARCA4; 0.0 NA cosmic_spacer_Pro
8 nes_ord P51532 779 DEMGLGKTIQTIALIT HHHCCCHHHHHHHHHH c1a-4 ORD middle|DEXHc_SMARCA4; 0.0 NA cosmic_phi
9 low complexity P51532 917 KLPELWALLNFLLPTIFK CHHHHHHHHHHHCCHHHH c4-5 boundary middle|DEXHc_SMARCA4; 0.0 Bad: -28.235 cosmic_phi_to_LIVMF
10 low complexity P51532 917 KLPELWALLNFLLP CHHHHHHHHHHHCC c3-4 boundary middle|DEXHc_SMARCA4; 0.0 Weak: -30.506 cosmic_phi_to_LIVMF
11 nes_diso P51532 961 TILIIRRLHKVLRPFL HHHHHHHHHHHHHHHH c1aR-5 boundary boundary|DEXHc_SMARCA4; 0.0 Bad: -27.358 cosmic_spacer
12 nes_diso P51532 973 RPFLLRRLKKEVEAQL HHHHHHHCHHHHHHHC c1aR-4 boundary boundary|DEXHc_SMARCA4; 0.0 Bad: -26.739 cosmic_spacer
13 nes_diso P51532 1007 LYRHMQAKGVLLTD HHHHHHHHCCEEEC c2-AT-4 boundary boundary|DEXHc_SMARCA4; 0.0 NA cosmic_spacer
14 nes_diso P51532 1028 GKGGTKTLMNTIMQLRK CCCCCHHHHHHHHHHHH c1c-AT-4 boundary 0.0 NA cosmic_spacer
15 nes_diso P51532 1051 MFQHIEESFSEHLGFTG CCHHHHHHHHCCCCCCC c1c-5 boundary boundary|SF2_C_SNF; 0.0 Medium: -37.684 cosmic_phi_to_LIVMF Medium|
16 nes_diso P51532 1061 EHLGFTGGIVQGLDLYR CCCCCCCCCCCCHHHHH c1c-4 boundary boundary|SF2_C_SNF; 0.0 Bad: -21.515 cosmic_spacer
17 nes_ord P51532 1080 GKFELLDRILPKLRATN CHHHHHHHHHHHHHHCC c1cR-4 ORD boundary|SF2_C_SNF; 0.0 Bad: -23.011 cosmic_spacer
18 nes_ord P51532 1097 HKVLLFCQMTSLMTIME CCEEEEHHHHHHHHHHH c1c-4 ORD boundary|SF2_C_SNF; 0.25 NA cosmic_spacer_Pro
19 nes_ord P51532 1098 KVLLFCQMTSLMTIME CEEEEHHHHHHHHHHH c1aR-5 ORD boundary|SF2_C_SNF; 0.14 NA cosmic_phi
20 nes_ord P51532 1101 LFCQMTSLMTIMED EEHHHHHHHHHHHH c3-4 ORD middle|SF2_C_SNF; 0.0 NA cosmic_phi
21 nes_ord P51532 1113 EDYFAYRGFKYLRLDG HHHHHHCCCCEEECCC c1a-AT-4 ORD middle|SF2_C_SNF; 0.14 NA cosmic_spacer
22 nes_diso P51532 1150 FIFLLSTRAGGLGLNL HHEEEECCCCCCCCCC c1a-AT-5 boundary middle|SF2_C_SNF; 0.29 NA cosmic_spacer
23 nes_diso P51532 1210 VEEKILAAAKYKLNVDQ HHHHHHHHHHHHCCHHH c1c-AT-4 boundary boundary|SF2_C_SNF; 0.0 NA cosmic_spacer
24 nes_diso P51532 1309 HEEEFDLFMRMDLDR CHHHHHHHHHHHHHH c1b-4 DISO boundary|SnAC; 0.0 Bad: -21.163 cosmic_spacer_Pro
25 nes_diso P51532 1503 KPVDFKKIKERIRNHK CCCCHHHHHHHHHCCC c1aR-4 boundary middle|Bromo_SNF2L2; 0.0 Bad: -21.795 cosmic_phi_to_LIVMF
26 nes_diso P51532 1521 SLNDLEKDVMLLCQ CHHHHHHHHHHHHH c3-4 __ middle|Bromo_SNF2L2; 0.0 Medium: -34.034 Medium|
27 nes_diso P51532 1528 DVMLLCQNAQTFNLEG HHHHHHHHHHHHCCCC c1a-AT-5 boundary boundary|Bromo_SNF2L2; 0.0 NA cosmic_spacer
28 nes_diso P51532 1549 DSIVLQSVFTSVRQKI HHHHHHHHHHHHHHHH c1aR-4 boundary boundary|Bromo_SNF2L2; 0.0 Weak: -32.825 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.