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P52701_MSH6 | DNA mismatch repair protein Msh6   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P52701 387 DHPDFDASTLYVPE CCCCCCCCCCCCCH c2-AT-4 boundary boundary|MutS; 0.0 NA cosmic_spacer
2 nes_ord P52701 431 KFYELYHMDALIGVSE CHHHHHHHHHHHHHHH c1d-5 ORD middle|MutS; 0.0 NA cosmic_spacer
3 nes_ord P52701 438 MDALIGVSELGLVF HHHHHHHHHHCEEE c2-4 ORD middle|MutS; 0.0 NA cosmic_spacer
4 nes_ord P52701 557 GVCFVDTSLGKFFIGQ EEEEEECCCCEEEEEE c1a-5 ORD middle|MutS; 0.43 NA cosmic_phi
5 nes_diso P52701 639 EEEYFREKLSDGIGVML HHHCHHHHCCCCCCCCC c1c-4 boundary middle|MutS; 0.0 Bad: -29.833 cosmic_spacer
6 nes_diso P52701 677 SELALSALGGCVFYLK CHHHHHHHHHHHHHHH c1aR-5 boundary middle|MutS; 0.0 Weak: -31.074 cosmic_phi_to_LIVMF Weak|
7 nes_diso P52701 680 ALSALGGCVFYLKK HHHHHHHHHHHHHH c3-4 boundary middle|MutS; 0.0 Medium: -34.668 cosmic_phi_to_LIVMF Medium|
8 nes_diso P52701 699 ELLSMANFEEYIPLDS HHHCCCCCEEECCCCC c1aR-4 boundary middle|MutS; 0.43 Bad: -25.944 cosmic_spacer
9 nes_diso P52701 721 RSGAIFTKAYQRMVLDA CCCCCCCCCCCEEEECH c1c-AT-4 boundary middle|MutS; boundary|MutS_III; 0.12 NA cosmic_spacer
10 nes_diso P52701 729 AYQRMVLDAVTLNN CCCEEEECHHHHHH c2-4 boundary middle|MutS; boundary|MutS_III; 0.57 NA cosmic_spacer
11 nes_diso P52701 734 VLDAVTLNNLEIFL EECHHHHHHEECEE c2-5 boundary middle|MutS; boundary|MutS_III; 0.14 Medium: -33.455 cosmic_spacer Medium|
12 nes_diso P52701 736 DAVTLNNLEIFLNGTN CHHHHHHEECEECCCC c1aR-4 boundary middle|MutS; boundary|MutS_III; 0.43 Weak: -31.088 cosmic_spacer Weak|
13 nes_ord P52701 788 INDRLDAIEDLMVVPD HHHHHHHHHHHHCCHH c1d-4 ORD middle|MutS; middle|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
14 nes_ord P52701 788 INDRLDAIEDLMVVP HHHHHHHHHHHHCCH c1b-4 ORD middle|MutS; middle|MutS_III; 0.0 NA cosmic_spacer
15 nes_diso P52701 797 DLMVVPDKISEVVELLK HHHCCHHHHHHHHHHHC c1c-5 boundary middle|MutS; middle|MutS_III; 0.0 Medium: -37.995 cosmic_spacer Medium|
16 nes_diso P52701 797 DLMVVPDKISEVVE HHHCCHHHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Medium: -35.047 cosmic_spacer Medium|
17 nes_diso P52701 804 KISEVVELLKKLPD HHHHHHHHHCCCCC c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -31.873 cosmic_spacer Weak|
18 nes_diso P52701 814 KLPDLERLLSKIHN CCCCHHHHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -32.574 cosmic_phi_to_LIVMF Weak|
19 nes_diso P52701 817 DLERLLSKIHNVGSPLKS CHHHHHHHHHHCCCCCCC c4-5 boundary middle|MutS; middle|MutS_III; 0.0 Bad: -28.527 cosmic_phi_to_LIVMF
20 nes_diso P52701 817 DLERLLSKIHNVGS CHHHHHHHHHHCCC c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Bad: -25.797 cosmic_phi_to_LIVMF
21 nes_diso P52701 854 KIIDFLSALEGFKVMC CHHHHHHHHHHHHHHH c1a-5 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -30.52 cosmic_spacer Weak|
22 nes_diso P52701 864 GFKVMCKIIGIMEE HHHHHHHHHHHHHH c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -30.165 cosmic_phi_to_LIVMF Weak|
23 nes_diso P52701 867 VMCKIIGIMEEVAD HHHHHHHHHHHHHC c3-4 boundary middle|MutS; middle|MutS_III; 0.0 Weak: -30.519 cosmic_phi_to_LIVMF Weak|
24 nes_ord P52701 1050 AVECIAVLDVLLCL HHHHHHHHHHHHHH c2-5 ORD middle|MutS; boundary|MutS_III; 0.0 NA cosmic_phi_to_LIVMF
25 nes_diso P52701 1139 GKSTLMRQAGLLAVMA CHHHHHHHHHHHHHHH c1a-AT-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 0.0 NA cosmic_spacer
26 nes_diso P52701 1166 RLTPIDRVFTRLGA EEEECCCCCCCCCC c3-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 0.14 Medium: -36.566 Medium|
27 nes_diso P52701 1197 TASILMHATAHSLVLVD HHHHHHHCCCCCEEEEE c1c-AT-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 0.0 NA cosmic_spacer
28 nes_diso P52701 1198 ASILMHATAHSLVLVDE HHHHHHCCCCCEEEEEC c1c-AT-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 0.12 NA cosmic_spacer
29 nes_diso P52701 1198 ASILMHATAHSLVLVD HHHHHHCCCCCEEEEE c1a-AT-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 0.0 NA cosmic_spacer
30 nes_beta_diso P52701 1260 VAVRLGHMACMVENEC CCCEEEEEEEEEECCC c1aR-4 boundary middle|MutS; middle|ABC_ATPase superfamily; 1.0 NA cosmic_spacer
31 nes_diso P52701 1322 EFEKMNQSLRLFRE HHHHHHHHHHHHHH c3-4 boundary boundary|MutS; boundary|ABC_ATPase superfamily; 0.0 Bad: -23.685 cosmic_phi_to_LIVMF
32 nes_diso P52701 1349 AVHKLLTLIKELXX HHHHHHHHHHHC c3-4-Ct DISO boundary|MutS; 0.0 Weak: -31.558 cosmic_spacer Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.