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P53675_CLH2 | Clathrin heavy chain 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P53675 9 FQEHFQLQNLGINP EEEEEEHHHCCCCH c2-4 boundary 0.43 Bad: -29.798
2 nes_diso P53675 21 NPANIGFSTLTMES CHHHCCCCEEEECC c2-4 __ small|Clathrin_propel; 0.29 Medium: -33.469 cosmic_spacer Medium|
3 nes_beta_diso P53675 44 VGEQAQVTIIDMSD ECCCCEEEEEECCC c2-AT-4 boundary 0.71 NA cosmic_spacer
4 nes_ord P53675 68 AESAIMNPASKVIALKA CCCEEECCCCCEEEEEC c1c-AT-4 ORD 0.38 NA cosmic_spacer
5 nes_ord P53675 76 ASKVIALKAGKTLQIFN CCCEEEEECCCEEEEEE c1c-AT-4 ORD 0.62 NA cosmic_spacer
6 nes_beta_ord P53675 84 AGKTLQIFNIEMKS CCCEEEEEECCHHH c2-4 ORD 0.86 NA cosmic_phi_to_LIVMF
7 nes_ord P53675 110 FWKWVSVNTVALVT EEEECCCCEEEEEC c2-4 ORD 0.43 NA cosmic_spacer
8 nes_diso P53675 179 GAMQLYSVDRKVSQPI EEEEEEECCCCCCCCE c1aR-4 boundary 0.43 NA
9 nes_beta_diso P53675 195 EGHAAAFAEFKMEG EEEEEEEEEEECCC c2-AT-4 boundary 1.0 NA cosmic_spacer
10 nes_beta_diso P53675 209 NAKPATLFCFAVRN CCCCEEEEEEEEEC c2-AT-4 boundary small|Clathrin_propel; 0.86 NA cosmic_spacer
11 nes_diso P53675 216 FCFAVRNPTGGKLHIIE EEEEEECCCCCEEEEEE c1c-AT-4 boundary small|Clathrin_propel; 0.38 NA cosmic_spacer
12 nes_diso P53675 220 VRNPTGGKLHIIEVGQ EECCCCCEEEEEEECC c1a-AT-4 boundary 0.57 NA cosmic_spacer
13 nes_beta_diso P53675 239 GNQPFVKKAVDVFFPP CCCCCEEEEEEECCCH c1a-AT-4 boundary 0.86 NA cosmic_spacer
14 nes_ord P53675 280 GYLHLYDLESGVCICM CEEEEEECCCCEEEEE c1aR-4 ORD 0.43 NA cosmic_spacer
15 nes_ord P53675 294 CMNRISADTIFVTA EECCCCCCCCEEEC c2-AT-5 ORD 0.0 NA cosmic_spacer
16 nes_diso P53675 361 EKLFVRKFNTLFAQGS HHHHHHHHHHHHHCCC c1aR-4 boundary boundary|Clathrin_H_link; 0.0 Bad: -25.646
17 nes_diso P53675 407 QSGQASPLLQYFGILL CCCCCCHHHHHHHHHH c1a-AT-4 boundary boundary|Clathrin_H_link; 0.0 NA cosmic_spacer
18 nes_diso P53675 423 DQGQLNKLESLELCH HHCCCCHHHHHHHHH c1b-4 boundary boundary|Clathrin_H_link; 0.0 Medium: -36.181 cosmic_phi Medium|
19 nes_ord P53675 429 KLESLELCHLVLQQ HHHHHHHHHHHHHH c2-5 ORD boundary|Clathrin_H_link; 0.0 Bad: -27.845 cosmic_phi
20 nes_ord P53675 465 DLVKTTDPMLALSVYL HHHHCCCHHHHHHHHH c1a-AT-5 ORD 0.0 NA cosmic_spacer
21 nes_ord P53675 466 LVKTTDPMLALSVYLRA HHHCCCHHHHHHHHHHC c1c-AT-5 ORD 0.0 NA cosmic_spacer
22 nes_diso P53675 511 TPDWIFLLRGVMKISP CCCHHHHHHHHHHHCH c1d-4 boundary boundary|CLH; 0.0 Bad: -27.141 cosmic_spacer
23 nes_diso P53675 526 PEQGLQFSRMLVQD HHHHHHHHHHHHCC c2-4 boundary boundary|CLH; 0.0 Bad: -24.707 cosmic_phi_to_LIVMF
24 nes_diso P53675 542 PLANISQIVDIFME CCCCHHHHHHHHHH c3-4 boundary boundary|CLH; 0.0 Weak: -31.444 cosmic_phi_to_LIVMF Weak|
25 nes_diso P53675 576 AEGLLQTWLLEMNLVH HHHHHHHHHHHHHHHC c1a-4 boundary middle|CLH; 0.0 Medium: -34.866 Medium|
26 nes_diso P53675 647 NPEWLVNFFGSLSVED CHHHHHHHHCCCCHHH c1a-4 boundary boundary|CLH; 0.0 Medium: -37.096 cosmic_spacer Medium|
27 nes_diso P53675 667 LHAMLSANIRQNLQLCV HHHHHHHCHHHHHHHHH c1c-4 __ boundary|CLH; boundary|CLH; 0.0 Weak: -31.859 cosmic_spacer Weak|
28 nes_diso P53675 671 LSANIRQNLQLCVQVAS HHHCHHHHHHHHHHHHH c1c-4 __ boundary|CLH; boundary|CLH; 0.0 Medium: -33.189 Medium|
29 nes_ord P53675 707 SYKGLFYFLGSIVNFSQ CCCHHHHHHHHHHCCCC c1c-4 ORD boundary|CLH; middle|CLH; 0.0 NA
30 nes_ord P53675 710 GLFYFLGSIVNFSQ HHHHHHHHHHCCCC c3-4 ORD middle|CLH; 0.0 NA
31 nes_ord P53675 773 PLIIVCDRFGFVHD HHHHHHHCCCCHHH c3-4 ORD middle|CLH; 0.0 NA cosmic_spacer
32 nes_ord P53675 780 RFGFVHDLVLYLYR CCCCHHHHHHHHHH c3-4 ORD middle|CLH; 0.0 NA cosmic_spacer_Pro
33 nes_ord P53675 808 NPSRTPAVIGGLLDVDC CCCCCCHHHHHHHCCCC c1c-AT-4 ORD boundary|CLH; boundary|CLH; 0.0 NA cosmic_spacer
34 nes_ord P53675 871 EEPATHNALAKIYIDS CCHHHHHHHHHHHHHC c1a-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
35 nes_diso P53675 1000 LPNELIELLEKIVLDN CCHHHHHHHHHHHHCC c1a-4 boundary middle|CLH; 0.0 Strong: -43.719 Strong|
36 nes_ord P53675 1049 NYDALDIASIAVSS CCCHHHHHHHHHHC c2-4 ORD middle|CLH; 0.0 NA cosmic_phi_to_LIVMF
37 nes_ord P53675 1064 LYEEAFTVFHKFDMNA CHHHHHHHHHHCCCCH c1a-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
38 nes_ord P53675 1065 YEEAFTVFHKFDMNA HHHHHHHHHHCCCCH c1b-4 ORD middle|CLH; 0.0 NA cosmic_spacer
39 nes_ord P53675 1071 VFHKFDMNASAIQVLI HHHHCCCCHHHHHHHH c1a-AT-5 ORD middle|CLH; 0.0 NA
40 nes_ord P53675 1073 HKFDMNASAIQVLIEH HHCCCCHHHHHHHHHH c1a-AT-4 ORD middle|CLH; 0.0 NA
41 nes_ord P53675 1081 AIQVLIEHIGNLDR HHHHHHHHHCCHHH c3-4 ORD middle|CLH; 0.0 NA
42 nes_ord P53675 1223 NFARLASTLVHLGE HHHHHHHHHHHHHH c3-4 ORD middle|CLH; 0.0 Weak: -31.441 cosmic_spacer
43 nes_ord P53675 1264 QEFRFAQLCGLHIVI CCHHHHHHHCCEEEE c1b-4 ORD boundary|CLH; boundary|CLH; 0.0 NA cosmic_phi_to_LIVMF
44 nes_ord P53675 1295 YFEELILLLEAALGLER CHHHHHHHHHHHHCCCC c1c-5 ORD boundary|CLH; middle|CLH; 0.0 NA
45 nes_ord P53675 1308 GLERAHMGMFTELAILY CCCCCCHHHHHHHHHHH c1c-AT-5 ORD middle|CLH; 0.0 NA cosmic_spacer
46 nes_ord P53675 1310 ERAHMGMFTELAILY CCCCHHHHHHHHHHH c1b-4 ORD middle|CLH; 0.0 NA cosmic_phi_to_LIVMF
47 nes_ord P53675 1353 EQAHLWAELVFLYD HHHHHHHHHHHHHH c2-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
48 nes_ord P53675 1390 QFKDIITKVANVELCY HHHHHHHHCCCHHHHH c1a-5 ORD boundary|CLH; 0.0 Weak: -32.627 cosmic_spacer
49 nes_ord P53675 1399 ANVELCYRALQFYLDY CCHHHHHHHHHHHHHH c1a-AT-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA cosmic_spacer
50 nes_ord P53675 1413 DYKPLLINDLLLVL HHCHHHHHHHHHHH c2-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA
51 low complexity P53675 1415 KPLLINDLLLVLSPRL CHHHHHHHHHHHHCCC c1aR-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA
52 nes_ord P53675 1444 QLPLVKPYLRSVQS CCCHHHHHHHHHHH c3-4 ORD boundary|CLH; boundary|Clathrin; 0.0 Medium: -33.773 cosmic_spacer
53 nes_diso P53675 1482 ASIDAYDNFDNISLAQ HHHHHHCCCCHHHHHH c1a-AT-4 boundary middle|Clathrin; 0.0 NA cosmic_spacer
54 nes_ord P53675 1503 QLMEFRCIAAYLYKGN CCHHHHHHHHHHHHHC c1aR-4 ORD middle|Clathrin; 0.0 NA cosmic_phi_to_LIVMF
55 nes_diso P53675 1599 FIQVMREYLSKVDK HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -24.065 cosmic_phi
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.