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P54132_BLM | Bloom syndrome protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_beta_diso P54132 43 SDNNVSVTNVSVAK CCCCCEEEEEECCC c2-4 DISO middle|BLM_N; 0.71 NA
2 nes_diso P54132 130 KSRDTALKKLEFSS CCCCCCHHHCCCCC c2-AT-4 DISO middle|BLM_N; 0.0 NA
3 nes_diso P54132 371 QLIHVMEHICKLID HHHHHHHHHHHHHH c3-4 DISO boundary|BLM_N; 0.0 Bad: -29.353 cosmic_spacer
4 nes_diso P54132 375 VMEHICKLIDTIPD HHHHHHHHHHHCCH c3-4 DISO boundary|BLM_N; small|BDHCT; 0.0 Bad: -25.857 cosmic_spacer
5 nes_diso P54132 402 QQRNIRRKLLTEVDFNK HHHHHHHHHHHHCCCCC c1c-4 DISO boundary|BLM_N; boundary|BDHCT_assoc; 0.0 Bad: -17.957
6 nes_diso P54132 442 DSCPTGNSMKELNFSH CCCCCCCCCCCCCCCC c1a-AT-4 DISO boundary|BDHCT_assoc; 0.0 NA
7 nes_diso P54132 606 DCLPVSSTAQNINFSE CCCCCCCCCCCCCCCH c1a-AT-4 DISO middle|BDHCT_assoc; 0.0 NA
8 nes_diso P54132 651 HTKEMMKIFHKKFGLHN CCHHHHHHHHHHHCCCC c1c-4 boundary boundary|BDHCT_assoc; boundary|DEXHc_RecQ2_BLM; boundary|recQ_fam; 0.0 Strong: -43.474 cosmic_phi_to_LIVMF Strong|
9 nes_diso P54132 701 LPACVSPGVTVVISPLRS HHHHCCCCEEEEECCHHH c4-4 boundary middle|DEXHc_RecQ2_BLM; middle|recQ_fam; 0.62 NA cosmic_phi_to_LIVMF
10 nes_diso P54132 708 GVTVVISPLRSLIVDQ CEEEEECCHHHHHHHH c1a-5 boundary middle|DEXHc_RecQ2_BLM; middle|recQ_fam; 0.29 Medium: -35.701 cosmic_phi_to_LIVMF Medium|
11 nes_diso P54132 720 IVDQVQKLTSLDIPA HHHHHHHHHHCCCCE c1b-5 boundary middle|DEXHc_RecQ2_BLM; middle|recQ_fam; 0.0 Weak: -32.496 cosmic_phi_to_LIVMF Weak|
12 low complexity P54132 820 KFPSVPVMALTA HCCCCCEEEEEC c2-rev ORD middle|DEXHc_RecQ2_BLM; middle|recQ_fam; 0.5 NA cosmic_phi
13 nes_ord P54132 833 ANPRVQKDILTQLKILR CCHHHHHHHHHHCCCCC c1c-4 ORD boundary|DEXHc_RecQ2_BLM; middle|recQ_fam; boundary|SF2_C_RecQ; 0.0 Bad: -22.445 cosmic_phi_to_LIVMF
14 nes_ord P54132 844 QLKILRPQVFSMSFNR HCCCCCCEEEEECCCC c1a-5 ORD boundary|DEXHc_RecQ2_BLM; middle|recQ_fam; boundary|SF2_C_RecQ; 0.57 Weak: -31.229 cosmic_phi_to_LIVMF
15 nes_ord P54132 939 GCQVICATIAFGMGIDK CCEEEEEEECCCCCCCC c1c-4 ORD middle|recQ_fam; middle|SF2_C_RecQ; 0.62 NA cosmic_spacer
16 nes_diso P54132 958 VRFVIHASLPKSVEGYY EEEEEECCCCCCHHHHH c1cR-4 boundary middle|recQ_fam; boundary|SF2_C_RecQ; 0.25 Bad: -22.364 cosmic_phi_to_LIVMF
17 nes_diso P54132 994 TYHDVTRLKRLIMMEK CHHHHHHHHHHHHCCC c1d-4 boundary middle|recQ_fam; boundary|SF2_C_RecQ; 0.0 Bad: -29.95 cosmic_phi_to_LIVMF
18 nes_diso P54132 994 TYHDVTRLKRLIMME CHHHHHHHHHHHHCC c1b-4 boundary middle|recQ_fam; boundary|SF2_C_RecQ; 0.0 Medium: -33.436 cosmic_spacer Medium|
19 nes_diso P54132 1073 KTRDVTDDVKSIVRFVQ EEEECHHHHHHHHHHHH c1c-4 boundary middle|recQ_fam; boundary|RQC; 0.0 Bad: -28.822 cosmic_phi
20 nes_diso P54132 1105 PSGRFTMNMLVDIFLGS CCCCCCHHHHHHHHCCC c1c-4 boundary middle|recQ_fam; middle|RQC; 0.0 Bad: -18.785 cosmic_phi_to_LIVMF
21 nes_diso P54132 1107 GRFTMNMLVDIFLGSK CCCCHHHHHHHHCCCC c1aR-4 boundary boundary|recQ_fam; middle|RQC; 0.0 Bad: -29.095 cosmic_spacer
22 nes_diso P54132 1138 SRHNAERLFKKLILDK CHHHHHHHHHHHHHCC c1a-AT-4 boundary boundary|recQ_fam; middle|RQC; 0.0 NA cosmic_spacer
23 nes_diso P54132 1147 KKLILDKILDEDLYINA HHHHHCCCCCEEEEECC c1c-4 boundary boundary|recQ_fam; middle|RQC; 0.25 Bad: -27.828 cosmic_spacer
24 nes_diso P54132 1173 LGNKAQTVLNGNLKVDF ECHHHHHHHCCCCEEEE c1c-AT-4 boundary boundary|recQ_fam; boundary|RQC; 0.0 NA cosmic_spacer
25 nes_diso P54132 1221 ELTEVCKSLGKVFGVHY HHHHHHHHHHHHHCCCH c1c-5 boundary boundary|RQC; boundary|HRDC; 0.0 Medium: -35.528 cosmic_spacer Medium|
26 nes_diso P54132 1221 ELTEVCKSLGKVFG HHHHHHHHHHHHHC c3-4 boundary boundary|RQC; boundary|HRDC; 0.0 Weak: -31.119 Weak|
27 nes_ord P54132 1229 LGKVFGVHYFNIFN HHHHHCCCHHEECC c2-4 ORD boundary|HRDC; 0.0 Bad: -28.961 cosmic_spacer
28 nes_diso P54132 1242 NTVTLKKLAESLSSDP CHHHHHHHHHHCCCCH c1aR-4 boundary middle|HRDC; 0.0 Bad: -27.716 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.