HOME Exp-NES Cancer-NES Human-NES Documentation Contact
P54277_PMS1 | PMS1 protein homolog 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P54277 1 XMKQLPAATVRLLS CCCCCHHHHHHHHH c2-AT-5-Nt boundary boundary|mutl; boundary|HATPase_MutL-MLH-PMS-like; 0.0 NA cosmic_spacer
2 nes_diso P54277 17 IITSVVSVVKELIE HHCCHHHHHHHHHH c3-4 boundary boundary|mutl; boundary|HATPase_MutL-MLH-PMS-like; 0.0 Weak: -32.874 cosmic_phi Weak|
3 nes_diso P54277 29 IENSLDAGATSVDVKL HHHHHCCCCCEEEEEE c1a-AT-4 boundary middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.14 NA cosmic_spacer
4 nes_ord P54277 60 GIKAVDAPVMAMKY CCCHHHHHHHHHHH c3-4 ORD middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.0 NA cosmic_phi
5 nes_ord P54277 96 ALGSICCIAEVLITT HHHHHHCEEEEEEEE c1b-5 ORD middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.57 Medium: -34.684 cosmic_spacer
6 nes_beta_diso P54277 137 LGQGTTVTALRLFK CCCCCEEEEEHHCC c2-AT-4 boundary middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.71 NA cosmic_spacer
7 nes_ord P54277 168 EIKKIQDLLMSFGILK HHHHHHHHHHHHHCCC c1a-5 ORD middle|mutl; boundary|HATPase_MutL-MLH-PMS-like; 0.0 Bad: -29.653 cosmic_spacer
8 nes_ord P54277 178 SFGILKPDLRIVFVHN HHHCCCCCCEEEEEEC c1a-5 ORD middle|mutl; boundary|HATPase_MutL-MLH-PMS-like; boundary|MutL_Trans_hPMS_1_like; 0.29 Bad: -29.378 cosmic_phi
9 nes_ord P54277 206 HKMALMSVLGTAVMNNM HHHHHHHHHCHHHHHCC c1cR-4 ORD middle|mutl; boundary|HATPase_MutL-MLH-PMS-like; boundary|MutL_Trans_hPMS_1_like; 0.0 NA cosmic_spacer
10 nes_diso P54277 287 ESTRLYPVFFLKIDVPT CCCCCCCEEEEEEECCH c1c-4 boundary boundary|mutl; middle|MutL_Trans_hPMS_1_like; 0.62 NA cosmic_spacer
11 low complexity P54277 290 RLYPVFFLKIDVPT CCCCEEEEEEECCH c2-5 boundary boundary|mutl; middle|MutL_Trans_hPMS_1_like; 0.86 NA cosmic_spacer
12 nes_diso P54277 349 NKTDVSAADIVLSK CCCCCCHHHHCCCC c2-AT-4 boundary boundary|mutl; boundary|MutL_Trans_hPMS_1_like; 0.0 NA
13 nes_diso P54277 356 ADIVLSKTAETDVLFNK HHHCCCCCCCCCCCCCC c1c-AT-4 DISO boundary|MutL_Trans_hPMS_1_like; 0.0 NA
14 nes_diso P54277 379 NYSNVDTSVIPFQN CCCCCCCCCCCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
15 nes_diso P54277 399 SGKNTDDCLNHQISIGD CCCCCCCHHCCCCCCCC c1c-AT-4 DISO 0.0 NA
16 nes_diso P54277 428 IDKNTKNAFQDISMSN CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA
17 nes_diso P54277 571 IKKPMSASALFVQD CCCCCCHHHHHHHH c2-AT-4 DISO boundary|HMG; boundary|HMGB-UBF_HMG-box; 0.0 NA
18 nes_diso P54277 601 ATLQIEELWKTLSEEE HHHHHHHHHHCCCHHH c1aR-4 DISO boundary|HMG; boundary|HMGB-UBF_HMG-box; 0.0 Bad: -29.589 cosmic_phi_to_LIVMF
19 nes_diso P54277 695 KMVQIPFSMKNLKINF CEEECCCCHHHHHHHH c1a-5 boundary 0.0 Bad: -24.871 cosmic_spacer
20 nes_diso P54277 734 DAWLMTSKTEVMLLNP CCEEEEECCCEEEECH c1a-AT-4 boundary 0.57 NA cosmic_spacer
21 nes_diso P54277 809 SDPRLTANGFKIKL CCCCCCCCCEEEEE c2-AT-4 boundary 0.14 NA cosmic_spacer
22 nes_diso P54277 831 NYLEIEGMANCLPFYG CEEEEEEECCCCCCCC c1aR-4 boundary 0.57 Bad: -20.817 cosmic_phi_to_LIVMF
23 nes_diso P54277 846 GVADLKEILNAILN CHHHHHHHHHHHHC c3-4 boundary 0.0 Weak: -32.16 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.