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P54278_PMS2 | Mismatch repair endonuclease PMS2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P54278 31 VVLSLSTAVKELVE HHHCHHHHHHHHHH c3-4 boundary boundary|mutl; boundary|HATPase_MutL-MLH-PMS-like; 0.0 Weak: -30.486 cosmic_phi_to_LIVMF Weak|
2 nes_ord P54278 43 VENSLDAGATNIDLKL HHHHHCCCCCEEEEEE c1a-AT-4 ORD middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.14 NA cosmic_spacer
3 nes_ord P54278 94 EFADLTQVETFGFRG CHHHHCCCEECCCCH c1b-5 ORD middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.29 Weak: -30.173 cosmic_spacer
4 nes_diso P54278 110 ALSSLCALSDVTIST HHHHHHHHCEEEEEE c1b-5 boundary middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.29 Weak: -32.944 cosmic_spacer Weak|
5 nes_diso P54278 123 STCHASAKVGTRLMFDH EEECCCCCEEEEEEECC c1c-AT-4 boundary middle|mutl; middle|HATPase_MutL-MLH-PMS-like; 0.5 NA cosmic_spacer
6 nes_diso P54278 186 QVLHAYCIISAGIRVSC HHHHHHHHHCCCCEEEE c1c-AT-5 boundary middle|mutl; boundary|HATPase_MutL-MLH-PMS-like; boundary|MutL_Trans_hPMS_2_like; 0.0 NA cosmic_spacer
7 nes_ord P54278 301 KVCRLVNEVYHMYN HHHHHHHHHHHHCC c3-4 ORD middle|mutl; middle|MutL_Trans_hPMS_2_like; 0.0 Medium: -34.778 cosmic_spacer
8 nes_beta_diso P54278 316 HQYPFVVLNISVDS CCCCEEEEEEEECH c2-4 boundary boundary|mutl; middle|MutL_Trans_hPMS_2_like; 0.86 NA cosmic_spacer
9 nes_diso P54278 348 EKLLLAVLKTSLIGMF HHHHHHHHHHHHHHHH c1aR-5 boundary boundary|mutl; boundary|MutL_Trans_hPMS_2_like; 0.0 Medium: -35.189 cosmic_phi_to_LIVMF Medium|
10 nes_diso P54278 351 LLAVLKTSLIGMFD HHHHHHHHHHHHHC c3-4 boundary boundary|mutl; boundary|MutL_Trans_hPMS_2_like; 0.0 Bad: -29.935 cosmic_phi_to_LIVMF
11 nes_diso P54278 359 LIGMFDSDVNKLNVSQ HHHHHCCCCCEEECCC c1a-5 boundary boundary|mutl; boundary|MutL_Trans_hPMS_2_like; 0.14 Weak: -32.927 cosmic_spacer Weak|
12 nes_diso P54278 376 PLLDVEGNLIKMHA CCCCCCCCCEECCH c3-4 boundary boundary|mutl; boundary|MutL_Trans_hPMS_2_like; 0.14 Medium: -37.717 Medium|
13 nes_diso P54278 413 KDVSISRLREAFSLRH CCCCHHHHHHHHHCCC c1d-4 DISO 0.0 Bad: -27.132 cosmic_spacer
14 nes_diso P54278 596 NTQDMSASQVDVAV HCCCCCCCHHHCEE c2-AT-4 DISO 0.0 NA cosmic_spacer
15 nes_diso P54278 614 KVVPLDFSMSSLAK CEECCCCCHHHHHH c3-4 DISO 0.0 Bad: -19.565 cosmic_phi
16 nes_diso P54278 618 LDFSMSSLAKRIKQLH CCCCHHHHHHHHHHHH c1aR-5 DISO 0.0 Weak: -32.977 cosmic_phi Weak|
17 nes_diso P54278 621 SMSSLAKRIKQLHH CHHHHHHHHHHHHH c3-4 DISO 0.0 Medium: -34.972 cosmic_phi Medium|
18 nes_diso P54278 664 LRKEISKTMFAEMEIIG HHHHHCHHHHHHCEEEE c1c-4 boundary boundary|MutL_C; boundary|MutL_C; 0.0 Weak: -31.603 cosmic_spacer Weak|
19 nes_diso P54278 674 AEMEIIGQFNLGFIITK HHCEEEEEECCCEEEEE c1c-4 boundary boundary|MutL_C; boundary|MutL_C; 0.62 Medium: -36.086 Medium|
20 nes_beta_diso P54278 680 GQFNLGFIITKLNEDI EEECCCEEEEECCCCE c1aR-4 boundary boundary|MutL_C; boundary|MutL_C; 0.71 NA
21 nes_diso P54278 683 NLGFIITKLNEDIFIVD CCCEEEEECCCCEEEEC c1c-5 __ boundary|MutL_C; boundary|MutL_C; 0.5 NA
22 nes_ord P54278 684 LGFIITKLNEDIFIVD CCEEEEECCCCEEEEC c1aR-5 ORD boundary|MutL_C; boundary|MutL_C; 0.43 NA
23 nes_ord P54278 687 IITKLNEDIFIVDQ EEEECCCCEEEECH c3-4 ORD boundary|MutL_C; boundary|MutL_C; 0.43 NA
24 nes_ord P54278 727 QTLNLTAVNEAVLIEN CCCCCCHHHHHHHHHC c1aR-4 ORD middle|MutL_C; middle|MutL_C; 0.0 Bad: -29.464
25 nes_ord P54278 734 VNEAVLIENLEIFR HHHHHHHHCHHHHH c2-4 ORD middle|MutL_C; middle|MutL_C; 0.0 Weak: -32.705
26 nes_ord P54278 757 ENAPVTERAKLISLPT CCCCCCCEEEEEEEEE c1a-AT-4 ORD middle|MutL_C; middle|MutL_C; 0.57 NA cosmic_spacer
27 nes_diso P54278 826 EMKKLITHMGEMDH HHHHHHHHHHHCCC c3-4 boundary boundary|MutL_C; boundary|MutL_C; 0.0 Medium: -37.137 Medium|
28 nes_diso P54278 845 HGRPTMRHIANLGVIS CCCHHHHHHHHCCCCC c1a-AT-4 boundary boundary|MutL_C; boundary|MutL_C; 0.0 NA
29 nes_diso P54278 846 GRPTMRHIANLGVIS CCHHHHHHHHCCCCC c1b-4 boundary boundary|MutL_C; boundary|MutL_C; 0.0 NA
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.