HOME Exp-NES Cancer-NES Human-NES Documentation Contact
P60228_EIF3E | Eukaryotic translation initiation factor 3 subunit E   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P60228 6 LTTRIAHFLDRHLVFPL CHHHHHHHCCHHHHHHH c1c-4 boundary boundary|eIF3_N; 0.0 Bad: -19.057 cosmic_phi_to_LIVMF
2 nes_diso P60228 14 LDRHLVFPLLEFLSVKE CCHHHHHHHHHHHHCCC c1c-4 terminal boundary|eIF3_N; 0.0 Weak: -31.882 cosmic_phi_to_LIVMF Weak|
3 nes_diso P60228 15 DRHLVFPLLEFLSVKE CHHHHHHHHHHHHCCC c1a-4 terminal boundary|eIF3_N; 0.0 Medium: -34.418 cosmic_phi_to_LIVMF Medium|
4 low complexity P60228 19 VFPLLEFLSVKE HHHHHHHHHCCC c2-rev terminal boundary|eIF3_N; 0.0 Bad: -22.612 cosmic_phi_to_LIVMF
5 nes_diso P60228 40 GKLDLLSDTNMVDFAM HHHHHHHCCCHHHHHH c1a-AT-4 boundary middle|eIF3_N; 0.0 NA cosmic_spacer
6 nes_diso P60228 49 NMVDFAMDVYKNLYSDD CHHHHHHHHHHHHHCCC c1cR-4 boundary middle|eIF3_N; 0.0 NA
7 nes_ord P60228 147 AAEYLYFFRVLVPA HHHHHHHHHHHCCC c2-4 ORD boundary|eIF3_N; 0.0 NA cosmic_spacer
8 nes_ord P60228 165 ALSSLWGKLASEILMQN HHHHHHHHHHHHHHHHC c1c-5 ORD boundary|eIF3_N; 0.0 NA cosmic_phi
9 nes_ord P60228 288 YKDPITEFVECLYVNF CCCHHHHHHHHHHHHC c1a-4 ORD boundary|PCI; 0.0 Bad: -27.256
10 nes_ord P60228 291 PITEFVECLYVNFDFDG HHHHHHHHHHHHCCHHH c1c-5 ORD boundary|PCI; 0.0 NA
11 nes_ord P60228 314 ECESVLVNDFFLVA HHHHHHHCCHHHHH c2-4 ORD middle|PCI; 0.0 NA cosmic_phi_to_LIVMF
12 nes_ord P60228 322 DFFLVACLEDFIENAR CHHHHHHHHHHHHHHH c1aR-4 ORD middle|PCI; 0.0 NA cosmic_phi_to_LIVMF
13 nes_ord P60228 328 CLEDFIENARLFIFET HHHHHHHHHHHHHHHH c1a-AT-5 ORD middle|PCI; 0.0 NA cosmic_spacer
14 nes_ord P60228 339 FIFETFCRIHQCISINM HHHHHHHHHHHHCCHHH c1c-AT-5 ORD middle|PCI; 0.0 NA cosmic_spacer_Pro
15 nes_ord P60228 340 IFETFCRIHQCISINM HHHHHHHHHHHCCHHH c1d-5 ORD middle|PCI; 0.0 NA cosmic_spacer_Pro
16 nes_ord P60228 349 QCISINMLADKLNMTP HHCCHHHHHHHHCCCH c1a-AT-4 ORD middle|PCI; 0.0 NA cosmic_spacer
17 nes_ord P60228 349 QCISINMLADKLNMTP HHCCHHHHHHHHCCCH c1d-4 ORD middle|PCI; 0.0 NA cosmic_spacer
18 nes_ord P60228 380 LDAKIDSKLGHVVMGN CCEEEECCCCEEEECC c1a-4 ORD boundary|PCI; 0.43 Weak: -32.96 cosmic_spacer
19 nes_diso P60228 400 PYQQVIEKTKSLSFRS HHHHHHHHHHHHHHHH c1a-AT-4 boundary boundary|PCI; 0.0 NA cosmic_spacer_Pro
20 nes_diso P60228 409 KSLSFRSQMLAMNIEK HHHHHHHHHHHHHHHH c1a-4 boundary boundary|PCI; 0.0 Weak: -32.624 cosmic_phi_to_LIVMF Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.