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Q00597_FANCC | Fanconi anemia group C protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q00597 10 CDYQFWMQKLSVWD HHHHHHHHHHHHHH c2-4 boundary boundary|Fanconi_C; 0.0 Medium: -33.377 Medium|
2 nes_diso Q00597 34 TCLHVAQFQEFLRKMY HHHHHHHHHHHHHHHH c1aR-5 boundary middle|Fanconi_C; 0.0 Bad: -29.279 cosmic_phi
3 nes_diso Q00597 37 HVAQFQEFLRKMYE HHHHHHHHHHHHHH c3-4 boundary middle|Fanconi_C; 0.0 Bad: -24.375 cosmic_phi
4 nes_diso Q00597 44 FLRKMYEALKEMDS HHHHHHHHHHHCCC c3-4 boundary middle|Fanconi_C; 0.0 Weak: -31.756 Weak|
5 nes_diso Q00597 113 WIQGVLSHILSALRFDK HHHHHHHHHHHHHCCCH c1c-5 boundary middle|Fanconi_C; 0.0 Bad: -24.26 cosmic_spacer
6 nes_diso Q00597 114 IQGVLSHILSALRFDK HHHHHHHHHHHHCCCH c1a-4 boundary middle|Fanconi_C; 0.0 Weak: -32.357 cosmic_spacer Weak|
7 nes_diso Q00597 176 APERVASLSRVCVPL CHHHHHHHHHHHHHH c1b-4 boundary middle|Fanconi_C; 0.0 Bad: -24.332 cosmic_spacer
8 nes_diso Q00597 182 SLSRVCVPLITLTD HHHHHHHHHCCCCC c3-4 boundary middle|Fanconi_C; 0.0 Weak: -32.749 Weak|
9 nes_ord Q00597 192 TLTDVDPLVEALLICH CCCCCHHHHHHHHHHC c1a-5 ORD middle|Fanconi_C; 0.0 Medium: -37.265 cosmic_spacer
10 nes_ord Q00597 215 LQPEFFEAVNEAILLKK HCHHHHHHHHHHHHHCC c1c-4 ORD middle|Fanconi_C; 0.0 NA cosmic_spacer
11 nes_ord Q00597 223 VNEAILLKKISLPM HHHHHHHCCCCCCH c2-4 ORD middle|Fanconi_C; 0.0 NA cosmic_phi_to_LIVMF
12 nes_ord Q00597 225 EAILLKKISLPMSAVV HHHHHCCCCCCHHHHH c1aR-5 ORD middle|Fanconi_C; 0.0 NA cosmic_phi
13 nes_ord Q00597 228 LLKKISLPMSAVVCLWL HHCCCCCCHHHHHHHHH c1c-5 ORD middle|Fanconi_C; 0.0 NA cosmic_phi
14 nes_ord Q00597 228 LLKKISLPMSAVVC HHCCCCCCHHHHHH c3-4 ORD middle|Fanconi_C; 0.0 NA cosmic_phi
15 nes_ord Q00597 246 HLPSLEKAMLHLFE HCHHHHHHHHHHHH c3-4 ORD middle|Fanconi_C; 0.0 Weak: -32.443 cosmic_spacer
16 nes_ord Q00597 304 ETDGALEIIATIQVFT HCCCCHHHHHHHHHHH c1a-AT-4 ORD middle|Fanconi_C; 0.0 NA cosmic_spacer
17 nes_ord Q00597 305 TDGALEIIATIQVFT CCCCHHHHHHHHHHH c1b-4 ORD middle|Fanconi_C; 0.0 NA cosmic_spacer
18 nes_ord Q00597 340 YFPYTSPSLAMVLLQD CCCCCCCCHHHHHHCC c1a-AT-5 ORD middle|Fanconi_C; 0.0 NA
19 nes_diso Q00597 387 CGGPFESWFLFIHFGG CCCHHHHHHHHHHHHH c1a-4 boundary middle|Fanconi_C; 0.0 Bad: -28.418 cosmic_phi
20 nes_diso Q00597 402 GWAEMVAEQLLMSA HHHHHHHHHHHHCC c2-AT-4 boundary middle|Fanconi_C; 0.0 NA cosmic_spacer
21 nes_diso Q00597 442 TMVQVKAVLGHLLAMSR HHHHHHHHHHHHHHHHC c1c-5 boundary middle|Fanconi_C; 0.0 Bad: -29.804
22 nes_diso Q00597 442 TMVQVKAVLGHLLA HHHHHHHHHHHHHH c3-4 boundary middle|Fanconi_C; 0.0 Medium: -34.145 Medium|
23 nes_diso Q00597 445 QVKAVLGHLLAMSR HHHHHHHHHHHHHC c3-4 boundary middle|Fanconi_C; 0.0 Weak: -30.526 Weak|
24 nes_diso Q00597 482 PAQQLIRHLLLNFLLWA HHHHHHHHHHHHHHHHC c1c-4 boundary middle|Fanconi_C; 0.0 Bad: -29.682 cosmic_spacer_Pro
25 nes_diso Q00597 483 AQQLIRHLLLNFLLWA HHHHHHHHHHHHHHHC c1a-4 boundary middle|Fanconi_C; 0.0 Weak: -31.291 cosmic_phi Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.