HOME Exp-NES Cancer-NES Human-NES Documentation Contact
Q00610_CLH1 | Clathrin heavy chain 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q00610 9 FQEHLQLQNLGINP EEEEECHHHCCCCH c2-4 boundary 0.29 Weak: -30.753 cosmic_phi Weak|
2 nes_diso Q00610 21 NPANIGFSTLTMES CHHHCCCCEEEECC c2-4 __ small|Clathrin_propel; 0.29 Weak: -30.703 cosmic_spacer Weak|
3 nes_diso Q00610 40 IREKVGEQAQVVIIDM EEEEECCCCEEEEEEC c1a-AT-4 boundary 0.43 NA
4 nes_ord Q00610 68 ADSAIMNPASKVIALKA CCEEEECCCCCEEEHHC c1c-AT-4 ORD 0.38 NA cosmic_spacer
5 nes_ord Q00610 76 ASKVIALKAGKTLQIFN CCCEEEHHCCCEEEEEE c1c-AT-4 ORD 0.38 NA cosmic_spacer
6 nes_beta_ord Q00610 84 AGKTLQIFNIEMKS CCCEEEEEEHHHHH c2-4 ORD 0.86 NA cosmic_spacer
7 nes_ord Q00610 110 FWKWISLNTVALVT EEEECCCCEEEEEE c2-4 ORD 0.43 NA cosmic_spacer
8 nes_diso Q00610 179 GAMQLYSVDRKVSQPI EEEEEEECCCCCCCCE c1aR-4 boundary 0.43 NA cosmic_spacer
9 nes_beta_diso Q00610 195 EGHAASFAQFKMEG EEEEEEEEEEECCC c2-AT-4 boundary 1.0 NA
10 nes_ord Q00610 216 FCFAVRGQAGGKLHIIE EEEEEECCCCCEEEEEE c1c-AT-4 ORD small|Clathrin_propel; 0.38 NA cosmic_spacer
11 nes_ord Q00610 220 VRGQAGGKLHIIEVGT EECCCCCEEEEEECCC c1a-AT-4 ORD 0.57 NA cosmic_spacer
12 nes_ord Q00610 239 GNQPFPKKAVDVFFPP CCCCCCCCEEEECCCH c1a-AT-4 ORD 0.43 NA cosmic_spacer
13 nes_diso Q00610 407 QPGQTSPLLQYFGILL CCCCCCHHHHHHHHHH c1a-AT-4 boundary boundary|Clathrin_H_link; 0.0 NA cosmic_spacer
14 nes_ord Q00610 459 CSEELGDLVKSVDPTLAL CCHHHHHHHHHHCHHHHH c4-4 ORD boundary|Clathrin_H_link; 0.0 NA cosmic_spacer
15 nes_ord Q00610 466 LVKSVDPTLALSVYLRA HHHHHCHHHHHHHHHHC c1c-5 ORD 0.0 NA cosmic_spacer
16 nes_diso Q00610 511 TPDWIFLLRNVMRISP CCCHHHHHHHHHHHCH c1d-4 boundary boundary|CLH; 0.0 Bad: -26.207 cosmic_spacer
17 nes_diso Q00610 542 PLADITQIVDVFME CCCCHHHHHHHHHH c3-4 boundary boundary|CLH; 0.0 Bad: -29.425
18 nes_diso Q00610 576 SEGPLQTRLLEMNLMH CCCHHHHHHHHHHHHC c1a-4 boundary middle|CLH; 0.0 Bad: -29.741 cosmic_phi_to_LIVMF
19 nes_ord Q00610 647 NPEWLVNYFGSLSVED CHHHHHHHHCCCCHHH c1a-4 ORD boundary|CLH; 0.0 Strong: -40.602 cosmic_spacer
20 nes_ord Q00610 667 LRAMLSANIRQNLQICV HHHHHHHCHHHHHHHHH c1c-4 ORD boundary|CLH; boundary|CLH; 0.0 Medium: -33.517 cosmic_spacer
21 nes_ord Q00610 671 LSANIRQNLQICVQVAS HHHCHHHHHHHHHHHHH c1c-4 ORD boundary|CLH; boundary|CLH; 0.0 Bad: -28.784 cosmic_spacer
22 nes_ord Q00610 697 SLIELFESFKSFEG HHHHHHHHCCCHHH c3-4 ORD boundary|CLH; boundary|CLH; 0.0 Medium: -33.653 cosmic_phi_to_LIVMF
23 nes_ord Q00610 704 SFKSFEGLFYFLGS HCCCHHHHHHHHHH c3-4 ORD boundary|CLH; boundary|CLH; 0.0 Medium: -35.768 cosmic_phi_to_LIVMF
24 nes_ord Q00610 707 SFEGLFYFLGSIVNFSQ CHHHHHHHHHHHHCCCC c1c-5 ORD boundary|CLH; middle|CLH; 0.0 Bad: -23.04 cosmic_phi
25 nes_ord Q00610 707 SFEGLFYFLGSIVN CHHHHHHHHHHHHC c3-4 ORD boundary|CLH; middle|CLH; 0.0 Bad: -26.948 cosmic_phi
26 nes_ord Q00610 710 GLFYFLGSIVNFSQ HHHHHHHHHHCCCC c3-4 ORD middle|CLH; 0.0 Bad: -29.612 cosmic_phi
27 nes_ord Q00610 773 PLIIVCDRFDFVHD HHHHHHHCCCCHHH c3-4 ORD middle|CLH; 0.0 NA cosmic_phi_to_LIVMF
28 nes_ord Q00610 780 RFDFVHDLVLYLYR CCCCHHHHHHHHHH c3-4 ORD middle|CLH; 0.0 NA cosmic_phi_to_LIVMF
29 nes_ord Q00610 808 NPSRLPVVIGGLLDVDC CHHCCCHHHHHHHCCCC c1c-4 ORD boundary|CLH; boundary|CLH; 0.0 NA cosmic_spacer
30 low complexity Q00610 811 RLPVVIGGLLDVDC CCCHHHHHHHCCCC c3-4 ORD boundary|CLH; boundary|CLH; 0.0 NA cosmic_spacer
31 nes_ord Q00610 871 EEPATHNALAKIYIDS CCHHHHHHHHHHHHHC c1a-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
32 nes_diso Q00610 1000 LPNELIELLEKIVLDN CCHHHHHHHHHHHHCC c1a-4 boundary boundary|CLH; middle|CLH; 0.0 Strong: -41.951 cosmic_phi_to_LIVMF Strong|
33 nes_diso Q00610 1064 LFEEAFAIFRKFDVNT CHHHHHHHHHHCCCCH c1a-AT-5 __ middle|CLH; 0.0 NA cosmic_spacer
34 nes_ord Q00610 1065 FEEAFAIFRKFDVNT HHHHHHHHHHCCCCH c1b-4 ORD middle|CLH; 0.0 NA cosmic_phi
35 nes_ord Q00610 1071 IFRKFDVNTSAVQVLI HHHHCCCCHHHHHHHH c1a-AT-5 ORD middle|CLH; 0.0 NA cosmic_spacer
36 nes_ord Q00610 1073 RKFDVNTSAVQVLIEH HHCCCCHHHHHHHHHH c1a-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
37 nes_ord Q00610 1081 AVQVLIEHIGNLDR HHHHHHHHHCCHHH c3-4 ORD middle|CLH; 0.0 NA cosmic_spacer
38 nes_ord Q00610 1223 NFGRLASTLVHLGE CHHHHHHHHHHHHH c3-4 ORD middle|CLH; 0.0 NA
39 nes_ord Q00610 1264 KEFRLAQMCGLHIVV CCHHHHHHHCHHHHH c1b-4 ORD boundary|CLH; boundary|CLH; 0.0 NA cosmic_spacer
40 nes_ord Q00610 1295 YFEELITMLEAALGLER CHHHHHHHHHHHHCCCC c1c-5 ORD boundary|CLH; middle|CLH; 0.0 NA cosmic_phi
41 nes_ord Q00610 1308 GLERAHMGMFTELAILY CCCCCCHHHHHHHHHHH c1c-AT-5 ORD middle|CLH; 0.0 NA cosmic_spacer
42 nes_ord Q00610 1310 ERAHMGMFTELAILY CCCCHHHHHHHHHHH c1b-4 ORD middle|CLH; 0.0 NA cosmic_spacer
43 nes_ord Q00610 1353 EQAHLWAELVFLYD HHHHHHHHHHHHHH c2-AT-4 ORD middle|CLH; 0.0 NA cosmic_spacer
44 nes_ord Q00610 1390 QFKDIITKVANVELYY HHHHHHHHCCCHHHHH c1a-5 ORD boundary|CLH; 0.0 Weak: -32.632
45 nes_ord Q00610 1399 ANVELYYRAIQFYLEF CCHHHHHHHHHHHHHH c1a-AT-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA
46 nes_ord Q00610 1410 FYLEFKPLLLNDLLMVL HHHHHCHHHHHHHHHHH c1c-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA cosmic_phi_to_LIVMF
47 low complexity Q00610 1413 EFKPLLLNDLLMVL HHCHHHHHHHHHHH c2-5 ORD boundary|CLH; boundary|Clathrin; 0.0 NA cosmic_phi_to_LIVMF
48 low complexity Q00610 1415 KPLLLNDLLMVLSPRL CHHHHHHHHHHHHHCC c1aR-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA cosmic_phi
49 nes_ord Q00610 1444 QLPLVKPYLRSVQN CCCCHHHHHHHHHH c3-4 ORD boundary|CLH; boundary|Clathrin; 0.0 NA cosmic_phi
50 nes_ord Q00610 1459 NNKSVNESLNNLFITE HHHHHHHHHHHHHCCH c1a-4 ORD middle|Clathrin; 0.0 NA cosmic_phi_to_LIVMF
51 nes_ord Q00610 1482 TSIDAYDNFDNISLAQ HHHHHHHCCCHHHHHH c1a-AT-4 ORD middle|Clathrin; 0.0 NA cosmic_spacer
52 nes_ord Q00610 1503 ELIEFRRIAAYLFKGN CCHHHHHHHHHHHHHC c1aR-4 ORD middle|Clathrin; 0.0 NA cosmic_phi_to_LIVMF
53 nes_diso Q00610 1599 FIQVMKEYLTKVDK HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -26.346 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.