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Q04721_NOTC2 | Neurogenic locus notch homolog protein 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q04721 471 CLDKIGGFTCLCMPG EECCCCCEEEECCCC c1b-5 boundary small|EGF_CA; 0.57 NA cosmic_phi_to_LIVMF
2 nes_diso Q04721 482 CMPGFKGVHCELEINE CCCCCCCCCCCCCCCC c1d-5 boundary 0.0 Medium: -35.106 cosmic_spacer Medium|
3 nes_ord Q04721 520 CPPGFTGPVCQIDIDD CCCCCCCCCCCCCCHH c1a-4 ORD 0.0 NA cosmic_spacer
4 nes_ord Q04721 926 CMDGVNTFSCLCLPG EECCCCCEEEECCCC c1b-5 ORD small|EGF_CA; 0.57 NA cosmic_phi_to_LIVMF
5 nes_diso Q04721 1538 QPENLAEGTLVIVVLMP CCCCCCCCEEEEEEECC c1c-AT-4 boundary boundary|NOD; 0.5 NA cosmic_spacer
6 nes_diso Q04721 1538 QPENLAEGTLVIVVLM CCCCCCCCEEEEEEEC c1a-AT-4 boundary boundary|NOD; 0.43 NA cosmic_spacer
7 nes_diso Q04721 1539 PENLAEGTLVIVVLMPP CCCCCCCEEEEEEECCH c1c-AT-4 boundary boundary|NOD; 0.62 NA cosmic_spacer
8 nes_diso Q04721 1539 PENLAEGTLVIVVLMP CCCCCCCEEEEEEECC c1a-AT-4 boundary boundary|NOD; 0.57 NA cosmic_spacer
9 nes_diso Q04721 1565 FLRALGTLLHTNLRIKR HHHHHCCCCCCCCCEEE c1c-5 boundary boundary|NOD; 0.0 Medium: -33.384 cosmic_spacer Medium|
10 nes_TM Q04721 1674 ERTQLLYLLAVAVVIIL CCCCCCHHHCCCCCHHH c1c-4 boundary boundary|NODP; 0.0 Weak: -31.761 cosmic_spacer
11 nes_TM Q04721 1675 RTQLLYLLAVAVVI CCCCCHHHCCCCCH c2-4 boundary boundary|NODP; 0.0 Medium: -34.575 cosmic_spacer
12 low complexity Q04721 1678 LLYLLAVAVVIILFII CCHHHCCCCCHHHHHH c1a-5 boundary boundary|NODP; 0.0 Strong: -43.933 cosmic_phi_to_LIVMF
13 low complexity Q04721 1680 YLLAVAVVIILFIILL HHHCCCCCHHHHHHCC c1a-5 boundary boundary|NODP; 0.0 Bad: -29.199 cosmic_spacer
14 low complexity Q04721 1682 LAVAVVIILFIILLGV HCCCCCHHHHHHCCCC c1a-4 boundary boundary|NODP; 0.0 Medium: -34.42 cosmic_spacer
15 low complexity Q04721 1682 LAVAVVIILFIILL HCCCCCHHHHHHCC c2-4 boundary boundary|NODP; 0.0 Medium: -37.239 cosmic_spacer
16 low complexity Q04721 1683 AVAVVIILFIILLGVIM CCCCCHHHHHHCCCCHH c1c-5 boundary boundary|NODP; 0.0 Strong: -51.856 cosmic_spacer
17 low complexity Q04721 1683 AVAVVIILFIILLG CCCCCHHHHHHCCC c2-5 boundary boundary|NODP; 0.0 Strong: -50.869 cosmic_phi_to_LIVMF
18 low complexity Q04721 1683 AVAVVIILFIILLG CCCCCHHHHHHCCC c3-4 boundary boundary|NODP; 0.0 Strong: -50.475 cosmic_spacer
19 low complexity Q04721 1686 VVIILFIILLGVIMAK CCHHHHHHCCCCHHHH c1a-5 boundary boundary|NODP; 0.0 Medium: -33.45 cosmic_spacer
20 nes_diso Q04721 1731 GQDAVGLKNLSVQV CHHHCCCCCCCCCC c2-4 DISO 0.0 Bad: -28.376 cosmic_phi_to_LIVMF
21 nes_diso Q04721 1733 DAVGLKNLSVQVSEAN HHCCCCCCCCCCCHHC c1aR-4 DISO 0.0 Bad: -27.084 cosmic_phi_to_LIVMF
22 nes_diso Q04721 1812 AEQEVDVLDVNVRG CCCCCCCCCCCCCC c2-4 DISO boundary|ANKYR; 0.0 Bad: -29.202 cosmic_phi
23 nes_diso Q04721 1914 LHAAVAADAQGVFQILI CCHHHHHCCHHHHHHHH c1c-AT-4 boundary boundary|ANKYR; middle|Ank_2; boundary|Ank_2; 0.0 NA cosmic_spacer
24 nes_diso Q04721 1942 NDGTTPLILAARLAVEG CCCCCHHHHHHHHHHHH c1c-AT-4 boundary boundary|ANKYR; boundary|Ank_2; boundary|Ank_2; 0.0 NA cosmic_spacer
25 nes_diso Q04721 1952 ARLAVEGMVAELINCQ HHHHHHHHHHHHHHCC c1aR-4 boundary boundary|ANKYR; boundary|Ank_2; boundary|Ank_2; 0.0 Medium: -37.566 cosmic_spacer Medium|
26 nes_diso Q04721 1986 AVNNVEATLLLLKN HHCHHHHHHHHHHC c3-4 DISO boundary|Ank_2; middle|Ank_2; 0.0 Weak: -30.923 cosmic_phi_to_LIVMF Weak|
27 nes_diso Q04721 2034 ANRDITDHMDRLPRDVAR CCCCCCCCCCCCHHHHHH c4-4 DISO boundary|Ank_2; 0.0 Bad: -15.58 cosmic_phi
28 low complexity Q04721 2300 PLPPIVTFQLIP CCCCCCCCCCCC c2-rev DISO 0.0 Weak: -32.582 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.