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Q12864_CAD17 | Cadherin-17   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_beta_diso Q12864 6 HLHSLCLLMLYLAT CCCEEEEEEEEECC c2-5 boundary boundary|Cadherin_repeat; 1.0 NA cosmic_phi_to_LIVMF
2 nes_beta_diso Q12864 6 HLHSLCLLMLYLAT CCCEEEEEEEEECC c3-4 boundary boundary|Cadherin_repeat; 1.0 NA cosmic_spacer
3 nes_diso Q12864 58 VTFELTGETDNIFVIER EEEEEECCCCCCEEECC c1c-AT-4 __ middle|Cadherin_repeat; 0.25 NA cosmic_spacer
4 nes_diso Q12864 58 VTFELTGETDNIFVIE EEEEEECCCCCCEEEC c1a-AT-4 __ middle|Cadherin_repeat; 0.29 NA cosmic_spacer
5 nes_diso Q12864 95 QVAALDANGIIVEG EEEEECCCCCCCEE c2-AT-5 boundary boundary|Cadherin_repeat; 0.29 NA cosmic_spacer
6 nes_ord Q12864 169 IQLPMINNVMYFQINN ECCCCCCCCCCEEEEC c1a-4 ORD middle|Cadherin_repeat; 0.0 Bad: -28.315 cosmic_spacer
7 nes_ord Q12864 178 MYFQINNKTGAISLTR CCEEEECCCCEEEEEC c1a-AT-4 ORD middle|Cadherin_repeat; 0.43 NA cosmic_spacer
8 nes_beta_ord Q12864 220 SENSFSDTTSVDIIVTE CCCCCEEEEEEEEEEEC c1c-AT-4 ORD boundary|Cadherin_repeat; 0.88 NA
9 nes_diso Q12864 316 YGKPLSYPLEIHVKVKD CCCCCCCCEEEEEEEEC c1c-4 boundary boundary|CA; boundary|Cadherin_repeat; 0.5 NA
10 nes_diso Q12864 384 QTPKLPMDGLFLIQ CCCCCCCCCCEEEE c2-4 boundary middle|Cadherin_repeat; 0.0 Strong: -42.206 cosmic_spacer Strong|
11 nes_diso Q12864 392 GLFLIQTYAGMLQLAK CCEEEECCCEEEEECC c1a-AT-5 boundary middle|Cadherin_repeat; 0.57 NA cosmic_spacer
12 nes_beta_diso Q12864 428 DFKTLCFVQINVID CCCCEEEEEEEEEC c2-5 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 0.86 NA cosmic_spacer
13 nes_beta_diso Q12864 431 TLCFVQINVIDIND CEEEEEEEEECCCC c2-5 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 1.0 NA cosmic_spacer
14 nes_beta_diso Q12864 431 TLCFVQINVIDIND CEEEEEEEEECCCC c3-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 1.0 NA cosmic_spacer
15 nes_diso Q12864 517 KPLDFETAAVSNIVFKA CCCCCCCCCEEEEEEEE c1c-AT-4 boundary middle|Cadherin_repeat; 0.38 NA cosmic_spacer
16 nes_beta_diso Q12864 549 SFAKFTLIVTDVNE CEEEEEEEEEECCC c3-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 1.0 NA cosmic_phi
17 nes_beta_diso Q12864 567 SQHVFQAKVSEDVAIGT CCCEEEEEEECCCCCCC c1c-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 0.75 NA
18 nes_ord Q12864 608 GWLKIDHVTGEIFSVA CCEEEECCCCEEEECC c1aR-5 ORD middle|Cadherin_repeat; 0.43 NA cosmic_phi
19 nes_ord Q12864 611 KIDHVTGEIFSVAP EEECCCCEEEECCC c3-4 ORD middle|Cadherin_repeat; 0.43 NA cosmic_phi
20 nes_beta_ord Q12864 643 GGSSLSSVSEFHLIL CCCCCEEEEEEEEEE c1b-4 ORD boundary|Cadherin_repeat; 0.86 NA
21 nes_beta_ord Q12864 649 SVSEFHLILMDVND EEEEEEEEEECCCC c2-5 ORD boundary|Cadherin_repeat; 1.0 NA
22 nes_beta_ord Q12864 649 SVSEFHLILMDVND EEEEEEEEEECCCC c3-4 ORD boundary|Cadherin_repeat; 1.0 NA
23 nes_TM Q12864 781 GIPTVGMAVGILLT ECCCCCCCCCHHHH c3-4 boundary 0.0 Bad: -27.613 cosmic_spacer
24 nes_TM Q12864 785 VGMAVGILLTTLLVIGI CCCCCCHHHHHHHHHHH c1c-4 boundary 0.0 NA cosmic_spacer
25 nes_TM Q12864 785 VGMAVGILLTTLLVIG CCCCCCHHHHHHHHHH c1a-4 boundary 0.0 NA cosmic_spacer
26 nes_TM Q12864 788 AVGILLTTLLVIGIIL CCCHHHHHHHHHHHHH c1a-5 boundary 0.0 NA cosmic_spacer
27 low complexity Q12864 792 LLTTLLVIGIILAV HHHHHHHHHHHHHH c2-5 boundary 0.0 NA cosmic_spacer
28 low complexity Q12864 795 TLLVIGIILAVVFIRI HHHHHHHHHHHHHHCC c1a-5 boundary 0.0 Strong: -41.383 cosmic_spacer
29 low complexity Q12864 797 LVIGIILAVVFIRIKK HHHHHHHHHHHHCCCC c1a-5 boundary 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.