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Q12879_NMDE1 | Glutamate receptor ionotropic, NMDA 2A   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_ord Q12879 59 QAAGLPLDVNVVALLM CCCCCCCEEEEEEEEC c1a-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.57 NA cosmic_phi_to_LIVMF
2 nes_beta_ord Q12879 61 AGLPLDVNVVALLMNR CCCCCEEEEEEEECCC c1a-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.86 NA cosmic_phi_to_LIVMF
3 nes_beta_ord Q12879 61 AGLPLDVNVVALLM CCCCCEEEEEEEEC c2-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.71 NA cosmic_phi_to_LIVMF
4 nes_beta_ord Q12879 63 LPLDVNVVALLMNRTD CCCEEEEEEEECCCCC c1aR-4 ORD middle|PBP1_iGluR_NMDA_NR2; 1.0 NA cosmic_phi_to_LIVMF
5 low complexity Q12879 63 LPLDVNVVALLMNR CCCEEEEEEEECCC c2-4 ORD middle|PBP1_iGluR_NMDA_NR2; 1.0 NA cosmic_phi_to_LIVMF
6 nes_ord Q12879 89 LMSGARIHGLVFGD HHCCCCCEEEEECC c2-AT-5 ORD middle|PBP1_iGluR_NMDA_NR2; 0.43 NA cosmic_spacer
7 nes_diso Q12879 147 FGASIQQQATVMLKIMQ CCCCHHHHHHHHHHHHH c1c-AT-4 boundary middle|PBP1_iGluR_NMDA_NR2; 0.0 NA cosmic_spacer
8 nes_ord Q12879 192 DNSFVGWDMQNVITLDT CCCCCCCEEEEEEECCC c1c-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.62 NA cosmic_spacer
9 nes_ord Q12879 215 TQVQLKKIHSSVILLY HHHHHHHCCCCEEEEE c1aR-5 ORD middle|PBP1_iGluR_NMDA_NR2; 0.0 NA cosmic_phi_to_LIVMF
10 nes_ord Q12879 218 QLKKIHSSVILLYC HHHHCCCCEEEEEC c3-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.29 NA cosmic_phi_to_LIVMF
11 nes_ord Q12879 235 EAVLILSEARSLGLTG HHHHHHHHHHHCCCCC c1a-AT-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.0 NA cosmic_spacer
12 nes_diso Q12879 284 WDYSLEARVRDGIGILT CCCCHHHHHHHHHHHHH c1c-4 boundary middle|PBP1_iGluR_NMDA_NR2; 0.0 Weak: -32.38 cosmic_spacer Weak|
13 nes_diso Q12879 330 PMHTLHPFMVNVTW CCCCHHHHHEEEEE c3-4 boundary middle|PBP1_iGluR_NMDA_NR2; 0.14 Medium: -37.352 cosmic_phi Medium|
14 nes_beta_ord Q12879 353 EGYQVHPRLVVIVLNK CCEEECCEEEEEEECC c1a-4 ORD middle|PBP1_iGluR_NMDA_NR2; 0.71 NA cosmic_spacer
15 nes_diso Q12879 438 KFVKINNSTNEGMNVKK HEECCCCCCCCCCCHHC c1c-AT-5 boundary middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan-Glu_bd; 0.0 NA cosmic_spacer
16 nes_diso Q12879 459 FCIDILKKLSRTVKFTY HHHHHHHHHHHHHCCCE c1c-4 boundary middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan-Glu_bd; 0.0 Bad: -18.782 cosmic_phi_to_LIVMF
17 nes_ord Q12879 503 QRAVMAVGSLTINE CCCCEEECCCCCCH c2-4 ORD middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan-Glu_bd; 0.43 NA cosmic_phi_to_LIVMF
18 nes_diso Q12879 525 SVPFVETGISVMVS CCCCCCEEEEEEEE c3-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.57 NA cosmic_phi
19 low complexity Q12879 553 FSASVWVMMFVMLLIVS CCHHHHHHHHHHHHHHH c1c-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Medium: -35.243 cosmic_phi
20 low complexity Q12879 553 FSASVWVMMFVMLLIV CCHHHHHHHHHHHHHH c1a-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Medium: -37.067 cosmic_phi_to_LIVMF
21 low complexity Q12879 553 FSASVWVMMFVMLL CCHHHHHHHHHHHH c2-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Medium: -36.043 cosmic_phi_to_LIVMF
22 low complexity Q12879 555 ASVWVMMFVMLLIVSA HHHHHHHHHHHHHHHH c1a-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Bad: -26.435 cosmic_spacer
23 low complexity Q12879 555 ASVWVMMFVMLLIV HHHHHHHHHHHHHH c2-4 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Weak: -31.245 cosmic_phi_to_LIVMF
24 low complexity Q12879 556 SVWVMMFVMLLIVS HHHHHHHHHHHHHH c2-5 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Medium: -33.252 cosmic_phi
25 low complexity Q12879 560 MMFVMLLIVSAIAVFV HHHHHHHHHHHHHHHH c1a-5 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Weak: -32.409 cosmic_phi
26 low complexity Q12879 563 VMLLIVSAIAVFVFEY HHHHHHHHHHHHHHHH c1a-5 boundary middle|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan-Glu_bd; boundary|Lig_chan; 0.0 Weak: -30.03 cosmic_phi_to_LIVMF
27 low complexity Q12879 629 IMVSVWAFFAVIFLAS HHHHHHHHHHHHHHHH c1a-5 __ middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan; 0.0 Medium: -33.954 cosmic_phi_to_LIVMF
28 nes_TM Q12879 643 ASYTANLAAFMIQE HHCCHHHHHHHHCC c2-AT-4 boundary middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan; 0.0 NA cosmic_spacer
29 nes_diso Q12879 650 AAFMIQEEFVDQVTGLS HHHHHCCCCCCCCCCCC c1cR-5 boundary middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan; 0.0 Medium: -38.324 cosmic_spacer Medium|
30 nes_ord Q12879 751 GSGYIFATTGYGIALQK CCCCCCCCCCEEEEECC c1c-AT-4 ORD middle|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan; 0.25 NA cosmic_spacer
31 nes_diso Q12879 771 WKRQIDLALLQFVG CHHHHHHHHHHHCC c2-4 boundary boundary|PBP2_iGluR_NMDA_Nr2; middle|Lig_chan; 0.0 Bad: -23.505 cosmic_phi_to_LIVMF
32 nes_TM Q12879 810 SQLDIDNMAGVFYMLA CCCCHHHHHHHHHHHH c1aR-5 boundary boundary|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan; boundary|NMDAR2_C; 0.0 Weak: -30.623 cosmic_phi_to_LIVMF
33 nes_TM Q12879 813 DIDNMAGVFYMLAA CHHHHHHHHHHHHH c3-4 boundary boundary|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan; boundary|NMDAR2_C; 0.0 Strong: -47.316 cosmic_phi_to_LIVMF
34 nes_TM Q12879 816 NMAGVFYMLAAAMALSL HHHHHHHHHHHHHHHHH c1c-5 boundary boundary|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan; boundary|NMDAR2_C; 0.0 Medium: -33.351 cosmic_spacer_Pro
35 nes_TM Q12879 824 LAAAMALSLITFIW HHHHHHHHHHHHHH c2-4 boundary boundary|PBP2_iGluR_NMDA_Nr2; boundary|Lig_chan; boundary|NMDAR2_C; 0.0 Medium: -36.721 cosmic_phi
36 nes_diso Q12879 863 ISRGIYSCIHGVHIEE ECCHHHHHHCCCCCCC c1a-4 boundary boundary|Lig_chan; middle|NMDAR2_C; 0.0 Bad: -28.179 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.