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Q13017_RHG05 | Rho GTPase-activating protein 5   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13017 127 AEKLMYICTDQLGLEQ HHHHHHEECCCCCCCC c1a-AT-4 boundary middle|P-loop_NTPase superfamily; 0.29 NA cosmic_spacer
2 nes_diso Q13017 150 PEGKLNVDGFLLCI CCCCCCEEEEEEEE c2-4 boundary middle|P-loop_NTPase superfamily; 0.57 NA
3 nes_beta_diso Q13017 152 GKLNVDGFLLCIDVSQ CCCCEEEEEEEEECCC c1aR-4 boundary middle|P-loop_NTPase superfamily; 1.0 NA cosmic_phi_to_LIVMF
4 nes_beta_diso Q13017 152 GKLNVDGFLLCIDVSQ CCCCEEEEEEEEECCC c1a-4 boundary middle|P-loop_NTPase superfamily; 1.0 NA cosmic_phi_to_LIVMF
5 nes_ord Q13017 176 QLKFVNNLFVQLSK HHHHHHHHHHHHHH c3-4 ORD middle|P-loop_NTPase superfamily; 0.0 Medium: -33.6 cosmic_spacer
6 nes_diso Q13017 219 KKNLLVVETSARFNVNI CCCCEEEECCCCCCCCH c1c-AT-4 boundary boundary|P-loop_NTPase superfamily; 0.5 NA cosmic_spacer
7 nes_diso Q13017 221 NLLVVETSARFNVNIET CCEEEECCCCCCCCHHH c1c-AT-5 boundary boundary|P-loop_NTPase superfamily; 0.25 NA cosmic_spacer
8 nes_diso Q13017 231 FNVNIETCFTALVQMLD CCCCHHHHHHHHHHHHH c1c-4 boundary boundary|P-loop_NTPase superfamily; boundary|RhoGAP-FF1; 0.0 Weak: -30.402 Weak|
9 nes_diso Q13017 338 YINTLPRAFNTLLPNLEE HHHHHHHHHHHHCCCHHH c4-5 boundary boundary|RhoGAP-FF1; boundary|FF; boundary|FF; 0.0 Weak: -31.215 cosmic_phi_to_LIVMF Weak|
10 nes_diso Q13017 338 YINTLPRAFNTLLP HHHHHHHHHHHHCC c3-4 boundary boundary|RhoGAP-FF1; boundary|FF; boundary|FF; 0.0 Medium: -34.669 cosmic_phi Medium|
11 nes_diso Q13017 345 AFNTLLPNLEEIEH HHHHHCCCHHHHCC c3-4 boundary boundary|RhoGAP-FF1; boundary|FF; boundary|FF; 0.0 Bad: -27.584 cosmic_phi_to_LIVMF
12 nes_diso Q13017 364 ALKLMEKRADFQLCFVV HHHHHHCCCCCCCEEEE c1c-AT-5 boundary boundary|RhoGAP-FF1; boundary|FF; 0.0 NA cosmic_spacer
13 nes_diso Q13017 370 KRADFQLCFVVLEK CCCCCCCEEEECCC c2-4 boundary boundary|RhoGAP-FF1; boundary|FF; 0.43 Weak: -32.234 cosmic_spacer Weak|
14 nes_diso Q13017 430 MKEKFKKTLEKIQFIS HHHHHHHHHHHCCCCC c1a-4 boundary boundary|FF; boundary|FF; 0.0 Bad: -26.435 cosmic_phi_to_LIVMF
15 nes_diso Q13017 482 IVEKAKEEFQEMLFEH HHHHHHHHHHHHHHHC c1a-AT-5 boundary boundary|FF; boundary|FF; 0.0 NA
16 nes_ord Q13017 537 DRESLLLKHIGFVY HHHHHHHHHHHHHC c2-4 ORD boundary|FF; 0.0 NA cosmic_spacer
17 nes_diso Q13017 589 DSTNIDKVNLFILGK CCCCCCCEEEEEECC c1b-4 boundary 0.57 NA cosmic_spacer
18 nes_beta_diso Q13017 621 DEYALDGKIYELDLRP CCEEECCEEEEEECCE c1a-4 boundary 0.71 NA cosmic_spacer
19 nes_diso Q13017 657 GCFCVFNSIESLSFIG EEEEEECCHHHHHHHH c1a-4 boundary 0.29 Weak: -32.05 Weak|
20 nes_diso Q13017 667 SLSFIGEFIGKIRT HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -28.007
21 nes_diso Q13017 749 ALRGVLESVKHNLDVVS HHHHHHHHHHHCCCCCC c1c-5 boundary 0.0 Medium: -35.61 cosmic_spacer Medium|
22 nes_diso Q13017 753 VLESVKHNLDVVSP HHHHHHHCCCCCCC c3-4 boundary 0.0 Bad: -25.333 cosmic_phi_to_LIVMF
23 nes_diso Q13017 788 DPFSVDLILSPFLDSH CCCCHHHHHHHHHCCC c1aR-4 boundary 0.0 Weak: -32.404 cosmic_spacer Weak|
24 nes_diso Q13017 862 SMGMLRAFLSEVQD HHHHHHHHHHHCCC c3-4 boundary 0.0 Bad: -27.866 cosmic_phi_to_LIVMF
25 nes_diso Q13017 873 VQDTIPVQLVAVTD CCCCCCEEEEEEEC c2-4 boundary 0.57 NA
26 nes_diso Q13017 924 YHRQTEVFTLFFSD HHHHHHHHHHHHHH c2-AT-4 boundary 0.0 NA cosmic_spacer
27 nes_diso Q13017 1270 AEKPIPLFVEKCVEFIE CCCCCCHHHHHHHHHHH c1c-4 boundary boundary|RhoGAP_p190; 0.0 Medium: -35.677 Medium|
28 nes_diso Q13017 1314 QDHNINLVSMEVTV CCCCCCHHHCCCCH c2-4 boundary middle|RhoGAP_p190; 0.0 Weak: -31.285 cosmic_phi_to_LIVMF Weak|
29 nes_diso Q13017 1316 HNINLVSMEVTVNAVA CCCCHHHCCCCHHHHH c1aR-5 boundary middle|RhoGAP_p190; 0.0 Medium: -37.409 cosmic_phi_to_LIVMF Medium|
30 nes_diso Q13017 1319 NLVSMEVTVNAVAG CHHHCCCCHHHHHH c3-4 boundary middle|RhoGAP_p190; 0.0 Weak: -30.771 cosmic_spacer Weak|
31 nes_diso Q13017 1326 TVNAVAGALKAFFA CHHHHHHHHHHHHH c3-4 boundary middle|RhoGAP_p190; 0.0 Medium: -38.516 cosmic_spacer Medium|
32 nes_diso Q13017 1366 RLHALKEIVKKFHP HHHHHHHHHHHCCH c3-4 boundary middle|RhoGAP_p190; 0.0 Weak: -30.183 Weak|
33 nes_diso Q13017 1384 VFRYVITHLNRVSQ HHHHHHHHHHHHHH c3-4 boundary middle|RhoGAP_p190; 0.0 Bad: -27.417
34 nes_diso Q13017 1397 QQHKINLMTADNLSICF HHHHHCCCCHHHEEEEE c1c-AT-4 boundary middle|RhoGAP_p190; 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.