HOME Exp-NES Cancer-NES Human-NES Documentation Contact
Q13029_PRDM2 | PR domain zinc finger protein 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13029 22 VLRGLPEEVRLFPSAVDK HHCCCCCCCEEECCCCCC c4-5 boundary boundary|SET; 0.38 Weak: -32.166 cosmic_phi_to_LIVMF Weak|
2 nes_diso Q13029 22 VLRGLPEEVRLFPS HHCCCCCCCEEECC c3-4 boundary boundary|SET; 0.14 Medium: -34.197 Medium|
3 nes_diso Q13029 346 TKEEANGDVFETFMFPC CHHHHCCCCCCCCCEEC c1c-AT-4 DISO 0.0 NA cosmic_spacer
4 nes_diso Q13029 367 RKFTTKQGLERHMHIHI CEECCCCCCCCEECCCC c1c-AT-4 DISO 0.12 NA cosmic_spacer
5 nes_diso Q13029 554 YIMDISSNISENLNYYI EEEECCCCCHHHCCCEE c1cR-4 DISO 0.0 Bad: -22.433 cosmic_spacer
6 nes_diso Q13029 609 ITQNIKTTQVPVTE ECCCEECCCCCCCC c2-AT-4 DISO 0.29 NA
7 nes_diso Q13029 665 LSLPLSISTTEAVSFHK CCCCCCCCCCCCHHCCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
8 nes_diso Q13029 880 KRKPTTCMLQKVLLNE CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
9 nes_diso Q13029 1142 PFLSIKDLTKHLSIHA CCCCHHHHHHHHHHCC c1aR-4 DISO 0.0 Medium: -34.16 cosmic_spacer Medium|
10 nes_diso Q13029 1179 EHRFLLHGVGNIFVCS HHCCCCCCCCCCEECC c1a-4 DISO 0.0 Weak: -30.405 cosmic_phi_to_LIVMF Weak|
11 nes_diso Q13029 1180 HRFLLHGVGNIFVCSV HCCCCCCCCCCEECCC c1aR-4 DISO 0.0 Bad: -28.906 cosmic_phi_to_LIVMF
12 nes_diso Q13029 1520 AEIKMQSMQTPLGKTR HHHHHHHCCCCCCCCC c1aR-4 DISO 0.0 Bad: -25.25 cosmic_spacer
13 nes_diso Q13029 1599 HSAQLSSKTSRSLHVRV CCCCCCCCCCCCHHEEC c1c-AT-4 DISO 0.0 NA
14 nes_diso Q13029 1671 AKQELKDFSYSLRLAS CCCCCCCCCHHHHHHH c1d-4 DISO 0.0 Medium: -34.844 cosmic_phi_to_LIVMF Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.