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Q13206_DDX10 | Probable ATP-dependent RNA helicase DDX10   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13206 65 VNEITRFSDFPLSK CCCCCCHHHCCCCH c2-AT-4 boundary boundary|SrmB; boundary|DEADc_DDX10; 0.0 NA cosmic_spacer
2 nes_ord Q13206 91 LVTEIQKQTIGLALQG CCHHHHHHHHHHHHCC c1a-AT-5 ORD middle|SrmB; boundary|DEADc_DDX10; 0.0 NA cosmic_spacer
3 low complexity Q13206 120 TLAFLVPVLEALYR HHHHHHHHHHHHHH c3-4 ORD middle|SrmB; middle|DEADc_DDX10; 0.0 Weak: -32.608 cosmic_spacer
4 nes_ord Q13206 123 FLVPVLEALYRLQW HHHHHHHHHHHCCC c3-4 ORD middle|SrmB; middle|DEADc_DDX10; 0.0 Bad: -20.811 cosmic_spacer
5 nes_ord Q13206 197 TPGRLLQHMDETVSFHA CHHHHHHHHHHCCCCCC c1c-4 ORD middle|SrmB; middle|DEADc_DDX10; 0.0 NA cosmic_spacer
6 nes_ord Q13206 205 MDETVSFHATDLQMLV HHHCCCCCCCCCCEEE c1a-AT-4 ORD middle|SrmB; middle|DEADc_DDX10; 0.0 NA cosmic_spacer
7 nes_ord Q13206 216 LQMLVLDEADRILDMGF CCEEEECCHHHHHHCCH c1c-AT-4 ORD middle|SrmB; middle|DEADc_DDX10; 0.25 NA
8 nes_ord Q13206 228 LDMGFADTMNAVIENLP HHCCHHHHHHHHHHHCC c1cR-5 ORD middle|SrmB; middle|DEADc_DDX10; 0.0 Bad: -24.906
9 nes_ord Q13206 256 QTKSVKDLARLSLKN CCCCHHHHHHHHCCC c1b-4 ORD middle|SrmB; boundary|DEADc_DDX10; boundary|SF2_C_DEAD; 0.0 Medium: -33.054 cosmic_spacer
10 nes_ord Q13206 289 EQNYIVCELQQKISVLY EEEEEEEEHHHHHHHHH c1c-4 ORD middle|SrmB; boundary|DEADc_DDX10; boundary|SF2_C_DEAD; 0.5 Medium: -33.96 cosmic_spacer
11 nes_ord Q13206 293 IVCELQQKISVLYS EEEEHHHHHHHHHH c3-4 ORD middle|SrmB; boundary|DEADc_DDX10; boundary|SF2_C_DEAD; 0.14 Bad: -28.729
12 nes_ord Q13206 325 EVQYLYRVFCRLRPGVSI HHHHHHHHHHHHCCCCEE c4-5 ORD middle|SrmB; middle|SF2_C_DEAD; 0.0 Medium: -36.656 cosmic_spacer
13 nes_ord Q13206 325 EVQYLYRVFCRLRP HHHHHHHHHHHHCC c3-4 ORD middle|SrmB; middle|SF2_C_DEAD; 0.0 Weak: -32.307 cosmic_spacer
14 nes_ord Q13206 332 VFCRLRPGVSILALHG HHHHHCCCCEEEEEEC c1a-5 ORD middle|SrmB; middle|SF2_C_DEAD; 0.29 Medium: -36.043 cosmic_spacer
15 nes_ord Q13206 370 FATDIAARGLDFPA EEECHHHCCCCCCC c2-AT-4 ORD middle|SrmB; middle|SF2_C_DEAD; 0.0 NA cosmic_spacer
16 nes_diso Q13206 431 LQKKVPVKEIKINP HHCCCCCCEECCCH c2-4 boundary middle|SrmB; boundary|SF2_C_DEAD; boundary|DUF4217; 0.29 Medium: -37.15 cosmic_phi Medium|
17 nes_diso Q13206 446 KLIDVQKKLESILA HHHCHHHHHHHHHH c3-4 boundary middle|SrmB; boundary|SF2_C_DEAD; boundary|DUF4217; 0.0 Medium: -35.091 Medium|
18 nes_diso Q13206 468 AQRCFVSYVRSVYLMK HHHHHHHHHHHHHHCC c1a-4 boundary middle|SrmB; boundary|DUF4217; 0.0 Bad: -25.647 cosmic_phi_to_LIVMF
19 nes_diso Q13206 491 SKLPIPEYALSLGLAV HHCCHHHHHHHCCCCC c1a-AT-4 boundary boundary|SrmB; boundary|DUF4217; 0.0 NA cosmic_spacer
20 nes_diso Q13206 544 EVEEFRAYFNEKMSILQ HHHHHHHHHHHHHHHHH c1c-5 DISO boundary|SrmB; boundary|DUF4217; 0.0 Strong: -41.46 cosmic_spacer Strong|
21 nes_diso Q13206 670 KVAEAKKVMKRNFKVNK HHHHHHHHHHHHCCCCC c1c-AT-5 DISO 0.0 NA cosmic_spacer
22 nes_diso Q13206 846 ARWDTLEPLDTGLSLAE CCCCCCCCCCCCCCHHH c1c-AT-4 DISO 0.0 NA cosmic_spacer
23 nes_diso Q13206 847 RWDTLEPLDTGLSLAE CCCCCCCCCCCCCHHH c1d-4 DISO 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.