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Q13618_CUL3 | Cullin-3   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13618 14 TKMRIRAFPMTMDEKY CCCCCCCCCCCCCHHH c1aR-4 boundary boundary|Cullin; 0.0 Bad: -21.32 cosmic_phi_to_LIVMF
2 nes_ord Q13618 53 SFEELYRNAYTMVLHK CHHHHHHHHHHHHHCC c1a-AT-5 ORD boundary|Cullin; 0.0 NA cosmic_spacer
3 nes_ord Q13618 118 MIRDILMYMDRVYVQQ HHHHHHHHHHHHHHHH c1a-5 ORD middle|Cullin; 0.0 NA cosmic_phi
4 nes_ord Q13618 132 QQNNVENVYNLGLII HHCCCCCHHHHHHHH c1b-4 ORD middle|Cullin; 0.0 NA cosmic_phi_to_LIVMF
5 nes_ord Q13618 140 YNLGLIIFRDQVVRYG HHHHHHHHHHHHHHCH c1aR-4 ORD middle|Cullin; 0.0 NA cosmic_phi_to_LIVMF
6 nes_ord Q13618 182 AIRNACQMLMILGLEG HHHHHHHHHHHCCCCC c1a-AT-5 ORD middle|Cullin; 0.0 NA cosmic_spacer
7 nes_ord Q13618 208 PFLEMSAEFFQMES HHHHHHHHHHHHHH c3-4 ORD middle|Cullin; 0.0 NA cosmic_phi_to_LIVMF
8 nes_ord Q13618 265 ERELISKHMKTIVEMEN HHHHHHHHHHHHHHHHC c1c-4 ORD middle|Cullin; 0.0 NA cosmic_spacer
9 nes_ord Q13618 295 DLGCMYKLFSRVPNGLKT HHHHHHHHHCCCCCHHHH c4-5 ORD middle|Cullin; 0.0 Bad: -26.702 cosmic_phi
10 nes_ord Q13618 295 DLGCMYKLFSRVPN HHHHHHHHHCCCCC c3-4 ORD middle|Cullin; 0.0 NA cosmic_phi
11 nes_diso Q13618 302 LFSRVPNGLKTMCE HHCCCCCHHHHHHH c3-4 boundary middle|Cullin; 0.0 Weak: -31.513 cosmic_phi_to_LIVMF Weak|
12 nes_diso Q13618 335 GKNPVDYIQGLLDLKS CCCHHHHHHHHHHHHH c1d-4 __ middle|Cullin; 0.0 Bad: -25.157
13 nes_diso Q13618 344 GLLDLKSRFDRFLLES HHHHHHHHHHHHHHHH c1a-5 boundary middle|Cullin; 0.0 Medium: -34.08 cosmic_phi Medium|
14 nes_diso Q13618 366 FKQTIAGDFEYFLNLNS HHHHHHHHHHHHHCCCC c1c-4 boundary middle|Cullin; 0.0 Medium: -36.716 cosmic_phi_to_LIVMF Medium|
15 nes_diso Q13618 404 TEQEVETILDKAMVLFR CHHHHHHHHHHHHHHHH c1c-4 boundary middle|Cullin; 0.0 Weak: -32.582 Weak|
16 nes_diso Q13618 408 VETILDKAMVLFRFMQ HHHHHHHHHHHHHHHC c1a-4 boundary middle|Cullin; 0.0 Medium: -33.986 cosmic_phi_to_LIVMF Medium|
17 nes_diso Q13618 466 FTSKLEGMFRDMSISN HHHHHHHHHHHHHHHH c1a-4 boundary middle|Cullin; 0.0 Medium: -35.658 cosmic_spacer Medium|
18 nes_diso Q13618 492 QATGVSLGGVDLTV HHHCCCCCCCCEEE c2-4 boundary middle|Cullin; 0.0 Medium: -33.587 cosmic_spacer Medium|
19 nes_diso Q13618 494 TGVSLGGVDLTVRVLT HCCCCCCCCEEEEECC c1aR-5 boundary middle|Cullin; 0.29 Bad: -29.227 cosmic_spacer
20 nes_diso Q13618 497 SLGGVDLTVRVLTT CCCCCCEEEEECCC c3-4 boundary middle|Cullin; 0.57 NA cosmic_spacer
21 nes_ord Q13618 527 APRHAFEIFRRFYLAK HHHHHHHHHHHHHHHC c1a-AT-4 ORD middle|Cullin; 0.0 NA cosmic_spacer
22 nes_ord Q13618 528 PRHAFEIFRRFYLAK HHHHHHHHHHHHHHC c1b-4 ORD middle|Cullin; 0.0 NA cosmic_spacer
23 nes_beta_diso Q13618 588 RKHILQVSTFQMTI CEEEEEEEHHHHHH c2-4 boundary middle|Cullin; 0.71 NA cosmic_phi
24 nes_diso Q13618 590 HILQVSTFQMTILMLF EEEEEEHHHHHHHHHC c1aR-5 boundary middle|Cullin; 0.29 Medium: -36.999 cosmic_phi_to_LIVMF Medium|
25 nes_diso Q13618 593 QVSTFQMTILMLFN EEEHHHHHHHHHCC c2-5 boundary middle|Cullin; 0.0 Bad: -23.674 cosmic_phi
26 nes_diso Q13618 593 QVSTFQMTILMLFN EEEHHHHHHHHHCC c3-4 boundary middle|Cullin; 0.0 Bad: -25.652 cosmic_phi_to_LIVMF
27 nes_diso Q13618 661 VNDQFTSKLHRVKIQT ECCCCCCCCEEEEECC c1a-4 boundary boundary|Cullin; 0.29 Medium: -34.57 cosmic_spacer Medium|
28 nes_diso Q13618 699 RKHEIEAAIVRIMK HHHHHHHHHHHHHH c2-AT-4 boundary boundary|Cullin; boundary|Cullin_Nedd8; 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.