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Q13635_PTC1 | Protein patched homolog 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q13635 75 APLWLRAKFQRLLFKL HHHHHHHHHHHHHHHH c1a-4 boundary middle|2A060602; 0.0 Medium: -37.836 cosmic_spacer Medium|
2 nes_TM Q13635 97 NCGKFLVVGLLIFG CCCHHHHHHHHHHH c2-4 boundary middle|2A060602; 0.0 Bad: -29.456 cosmic_phi_to_LIVMF
3 low complexity Q13635 98 CGKFLVVGLLIFGA CCHHHHHHHHHHHH c2-4 boundary middle|2A060602; 0.0 Weak: -32.821 cosmic_phi_to_LIVMF
4 low complexity Q13635 100 KFLVVGLLIFGAFAVGL HHHHHHHHHHHHHHHHH c1c-5 boundary middle|2A060602; 0.0 Medium: -37.135 cosmic_phi_to_LIVMF
5 nes_TM Q13635 103 VVGLLIFGAFAVGL HHHHHHHHHHHHHH c2-5 boundary middle|2A060602; 0.0 Weak: -31.726 cosmic_spacer
6 nes_TM Q13635 105 GLLIFGAFAVGLKAAN HHHHHHHHHHHHHHCC c1aR-4 boundary middle|2A060602; 0.0 Strong: -40.386 cosmic_spacer
7 nes_TM Q13635 119 ANLETNVEELWVEV CCCCCCHHHHCCCC c2-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
8 nes_ord Q13635 179 LDSALQASRVHVYM HHHHHHHHEEEEEE c2-AT-4 ORD middle|2A060602; 0.29 NA cosmic_spacer
9 nes_ord Q13635 212 ETGYMDQIIEYLYPCLII CCCHHHHHHHHHCCCEEE c4-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
10 nes_TM Q13635 426 TLDDILKSFSDVSVIR HHHHHHHHHCHHHHHH c1a-5 boundary middle|2A060602; 0.0 Medium: -34.046 cosmic_phi
11 nes_TM Q13635 443 ASGYLLMLAYACLTMLR HHHHHHHHHHHHHHHHH c1c-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
12 nes_TM Q13635 465 SQGAVGLAGVLLVA CHHHHHHHHHHHHH c2-4 ORD middle|2A060602; 0.0 Bad: -26.292 cosmic_spacer_Pro
13 nes_TM Q13635 467 GAVGLAGVLLVALSVAA HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 Strong: -41.536 cosmic_spacer
14 nes_TM Q13635 470 GLAGVLLVALSVAA HHHHHHHHHHHHHH c2-5 ORD middle|2A060602; 0.0 Medium: -33.055 cosmic_phi_to_LIVMF
15 nes_TM Q13635 473 GVLLVALSVAAGLGLCS HHHHHHHHHHHHHHHHH c1c-5 ORD middle|2A060602; 0.0 Medium: -33.152 cosmic_phi_to_LIVMF
16 nes_TM Q13635 479 LSVAAGLGLCSLIGISF HHHHHHHHHHHHHCCCC c1c-AT-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
17 nes_TM Q13635 483 AGLGLCSLIGISFNA HHHHHHHHHCCCCCH c1b-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
18 nes_TM Q13635 498 ATTQVLPFLALGVGVDD HHHHHHHHHHHHHCCCH c1c-4 boundary middle|2A060602; 0.0 Medium: -37.007 cosmic_spacer
19 nes_TM Q13635 504 PFLALGVGVDDVFLLA HHHHHHHCCCHHHHHH c1a-5 boundary middle|2A060602; 0.0 Weak: -30.689 cosmic_spacer
20 nes_TM Q13635 549 ALTSISNVTAFFMAA HHHHHHHHHHHHHHH c1b-5 boundary middle|2A060602; 0.0 Medium: -35.345 cosmic_spacer_Pro
21 nes_TM Q13635 566 PIPALRAFSLQA CCHHHHHHHHHH c2-rev ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
22 nes_TM Q13635 571 RAFSLQAAVVVVFNFAM HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
23 nes_TM Q13635 575 LQAAVVVVFNFAMVLLI HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
24 nes_TM Q13635 576 QAAVVVVFNFAMVL HHHHHHHHHHHHHH c2-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
25 low complexity Q13635 577 AAVVVVFNFAMVLLIFP HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
26 low complexity Q13635 577 AAVVVVFNFAMVLLIF HHHHHHHHHHHHHHHH c1a-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
27 low complexity Q13635 579 VVVVFNFAMVLLIFPA HHHHHHHHHHHHHHHH c1a-5 ORD middle|2A060602; 0.0 Bad: -24.256 cosmic_phi_to_LIVMF
28 low complexity Q13635 587 MVLLIFPAILSMDLYR HHHHHHHHHHHHHHHH c1a-5 boundary middle|2A060602; 0.0 Weak: -32.087 cosmic_phi_to_LIVMF
29 nes_diso Q13635 611 FCCFTSPCVSRVIQVEP EEEEECCCCCCCCCCCC c1c-AT-4 boundary middle|2A060602; 0.12 NA cosmic_spacer
30 nes_diso Q13635 650 FAHETQITMQSTVQLRT CCCCEEEECCCCCCCEE c1c-AT-4 DISO middle|2A060602; 0.5 NA cosmic_spacer
31 low complexity Q13635 741 APFLLKPKAKVVVIFLF HHHHCCHHHHHHHHHHH c1c-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
32 nes_TM Q13635 741 APFLLKPKAKVVVIFL HHHHCCHHHHHHHHHH c1a-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
33 nes_TM Q13635 747 PKAKVVVIFLFLGLLG HHHHHHHHHHHHHHHH c1a-4 boundary middle|2A060602; 0.0 Medium: -37.25 cosmic_spacer
34 low complexity Q13635 750 KVVVIFLFLGLLGVSL HHHHHHHHHHHHHHHH c1a-5 boundary middle|2A060602; 0.0 Bad: -28.202 cosmic_phi_to_LIVMF
35 low complexity Q13635 752 VVIFLFLGLLGVSLYG HHHHHHHHHHHHHHHH c1a-5 __ middle|2A060602; 0.0 Medium: -35.198 cosmic_phi_to_LIVMF
36 nes_ord Q13635 787 EYDFIAAQFKYFSFYN HHHHHHHHHHHHCCCC c1a-4 ORD middle|2A060602; 0.0 Medium: -34.147 cosmic_phi
37 nes_ord Q13635 794 QFKYFSFYNMYIVT HHHHHCCCCEEEEE c2-5 ORD middle|2A060602; 0.14 Bad: -24.434 cosmic_phi
38 nes_diso Q13635 818 LLYDLHRSFSNVKY HHHHHHHHCCCCCH c3-4 boundary middle|2A060602; 0.0 Bad: -29.49 cosmic_phi
39 nes_diso Q13635 844 WLHYFRDWLQGLQD HHHHHHHHHHHHHH c3-4 boundary middle|2A060602; 0.0 Bad: -24.262
40 nes_diso Q13635 877 SDDGVLAYKLLVQT CCCCCCCCHHHHCC c2-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
41 nes_diso Q13635 910 ADGIINPSAFYIYLTA CCCCCCHHHHHHHHHH c1a-AT-4 boundary middle|2A060602; 0.0 NA cosmic_spacer
42 nes_TM Q13635 1020 QYIGLRHWLLLFISVVL HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
43 low complexity Q13635 1025 RHWLLLFISVVLAC HHHHHHHHHHHHHH c2-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
44 low complexity Q13635 1028 LLLFISVVLACTFLVCA HHHHHHHHHHHHHHHHH c1c-5 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
45 nes_TM Q13635 1036 LACTFLVCAVFLLN HHHHHHHHHHHHHC c2-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
46 low complexity Q13635 1044 AVFLLNPWTAGIIVMVL HHHHHCHHHHHHHHHHH c1c-AT-5 ORD middle|2A060602; 0.0 NA cosmic_spacer
47 nes_TM Q13635 1044 AVFLLNPWTAGIIVMV HHHHHCHHHHHHHHHH c1a-AT-5 ORD middle|2A060602; 0.0 NA cosmic_spacer
48 nes_TM Q13635 1051 WTAGIIVMVLALMTVEL HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
49 low complexity Q13635 1054 GIIVMVLALMTVELFG HHHHHHHHHHHHHHHH c1a-5 ORD middle|2A060602; 0.0 NA cosmic_spacer
50 nes_TM Q13635 1115 AVLALEHMFAPVLDGA HHHHHHHCHHHHHHHH c1aR-4 ORD middle|2A060602; 0.0 NA cosmic_phi
51 nes_TM Q13635 1123 FAPVLDGAVSTLLGVLM HHHHHHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer_Pro
52 nes_TM Q13635 1127 LDGAVSTLLGVLMLAG HHHHHHHHHHHHHHHC c1a-4 ORD middle|2A060602; 0.0 NA cosmic_phi_to_LIVMF
53 nes_TM Q13635 1133 TLLGVLMLAGSEFDFIV HHHHHHHHHCCCCHHHH c1c-AT-5 ORD middle|2A060602; 0.0 NA cosmic_spacer
54 nes_TM Q13635 1141 AGSEFDFIVRYFFAVLA HCCCCHHHHHHHHHHHH c1c-4 ORD middle|2A060602; 0.0 NA cosmic_spacer
55 nes_TM Q13635 1148 IVRYFFAVLAILTILG HHHHHHHHHHHHHHHH c1a-5 ORD middle|2A060602; 0.0 Medium: -34.137 cosmic_phi_to_LIVMF
56 nes_TM Q13635 1151 YFFAVLAILTILGVLN HHHHHHHHHHHHHHHH c1a-5 boundary middle|2A060602; 0.0 Weak: -31.058 cosmic_phi_to_LIVMF
57 nes_TM Q13635 1157 AILTILGVLNGLVLLP HHHHHHHHHHHHHHHH c1a-5 boundary middle|2A060602; 0.0 Medium: -33.141 cosmic_phi_to_LIVMF
58 low complexity Q13635 1167 GLVLLPVLLSFFGP HHHHHHHHHHHHCC c3-4 boundary middle|2A060602; 0.0 Bad: -25.504 cosmic_spacer
59 nes_diso Q13635 1367 PITTVTASASVTVAVHP CEEEEEECCCCEEEECC c1c-AT-5 DISO 0.5 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.