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Q14683_SMC1A | Structural maintenance of chromosomes protein 1A   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q14683 38 KSNLMDAISFVLGE HHHHHHHHHHHHCC c2-AT-4 __ middle|SMC_N; middle|ABC_SMC1_euk; 0.0 NA cosmic_spacer
2 nes_diso Q14683 45 ISFVLGEKTSNLRVKT HHHHHCCCHHHCCCCC c1a-AT-4 boundary middle|SMC_N; middle|ABC_SMC1_euk; 0.0 NA cosmic_spacer
3 nes_diso Q14683 54 SNLRVKTLRDLIHGAP HHCCCCCHHHHHHCCC c1aR-4 boundary middle|SMC_N; middle|ABC_SMC1_euk; 0.0 Bad: -27.855 cosmic_spacer
4 nes_diso Q14683 122 EKLGILIKARNFLVFQG HHCCCCCCCCCEEEECC c1c-AT-4 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.12 NA
5 nes_diso Q14683 122 EKLGILIKARNFLVFQ HHCCCCCCCCCEEEEC c1a-AT-4 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.0 NA
6 nes_diso Q14683 132 NFLVFQGAVESIAMKN CEEEECCHHHHHHCCC c1a-5 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.14 Bad: -29.397
7 nes_diso Q14683 217 VRAQVQLQLFKLYH HHHHHHHHHHHHHH c2-4 boundary middle|SMC_N; 0.0 Bad: -29.682 cosmic_spacer
8 nes_diso Q14683 332 DMDELEKEMLSVEK HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; 0.0 Bad: -27.987 cosmic_spacer
9 nes_diso Q14683 451 EQKKLEGELTEEVEMAK HHHHHHHHHHHHHHHHH c1c-4 DISO middle|SMC_N; middle|PRK00409 superfamily; 0.0 Bad: -27.578
10 nes_diso Q14683 469 RIDEINKELNQVME HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; middle|PRK00409 superfamily; 0.0 Medium: -35.482 cosmic_spacer Medium|
11 nes_ord Q14683 534 VTKVLGKNMDAIIVDS HHHHHCHHCCEEEECC c1a-4 ORD middle|SMC_N; boundary|PRK00409 superfamily; boundary|SMC_hinge; 0.14 NA
12 nes_diso Q14683 567 PETFLPLDYLEVKP CCCCCCCCCCCCCC c2-4 boundary middle|SMC_N; middle|SMC_hinge; 0.0 Medium: -37.326 cosmic_spacer Medium|
13 nes_diso Q14683 697 ELRQVQSQAHGLQMRL HHHHHHHHHHHHHHHH c1a-AT-5 DISO middle|SMC_N; 0.0 NA cosmic_spacer
14 nes_diso Q14683 733 EKSKLESELANFGPRIND HHHHHHHHHHHHHHHHHH c4-4 DISO middle|SMC_N; 0.0 Bad: -26.251 cosmic_spacer
15 nes_diso Q14683 740 ELANFGPRINDIKR HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; 0.0 Bad: -25.887 cosmic_spacer
16 nes_diso Q14683 761 EMKDLKEKMNQVED HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; 0.0 Weak: -31.898 cosmic_spacer Weak|
17 nes_diso Q14683 772 VEDEVFEEFCREIGVRN HHHHHHHHHHHHHCCCC c1c-4 DISO middle|SMC_N; 0.0 Strong: -42.387 cosmic_spacer Strong|
18 nes_diso Q14683 859 HMKIIDETMAQLQD HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; 0.0 Medium: -38.7 cosmic_spacer Medium|
19 nes_diso Q14683 904 EMTHLQKEVTAIET HHHHHHHHHHHHHH c3-4 DISO middle|SMC_N; 0.0 Bad: -28.751 cosmic_phi
20 nes_diso Q14683 1066 RFDRFNACFESVAT HHHHHHHHHHHHHH c3-4 boundary middle|SMC_N; 0.0 Medium: -36.687 Medium|
21 nes_diso Q14683 1073 CFESVATNIDEIYK HHHHHHHHHHHHHH c3-4 boundary middle|SMC_N; 0.0 Bad: -24.649 cosmic_phi
22 nes_diso Q14683 1130 GGEKTVAALALLFAIHS HHHHHHHHHHHHHHHHH c1c-AT-4 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.0 NA cosmic_spacer
23 nes_diso Q14683 1131 GEKTVAALALLFAIHS HHHHHHHHHHHHHHHH c1a-AT-4 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.0 NA cosmic_spacer
24 nes_diso Q14683 1131 GEKTVAALALLFAIHS HHHHHHHHHHHHHHHH c1d-4 boundary middle|SMC_N; boundary|ABC_SMC1_euk; 0.0 NA cosmic_spacer
25 nes_ord Q14683 1151 PFFVLDEIDAALDNTN CEEECCCCCHHHCCHH c1aR-4 ORD middle|SMC_N; middle|ABC_SMC1_euk; 0.0 NA cosmic_spacer
26 nes_beta_ord Q14683 1178 STCNFQAIVISLKE CCCCCEEEEEECCH c2-AT-4 ORD boundary|SMC_N; middle|ABC_SMC1_euk; 0.71 NA
27 nes_diso Q14683 1189 LKEEFYTKAESLIGVYP CCHHHHHHHCCEEEEEC c1c-AT-4 boundary boundary|SMC_N; boundary|ABC_SMC1_euk; 0.12 NA cosmic_spacer
28 nes_beta_diso Q14683 1207 QGDCVISKVLTFDLTK CCCEEEEEEEEEECHH c1a-4 boundary boundary|SMC_N; boundary|ABC_SMC1_euk; 1.0 NA
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.