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Q15154_PCM1 | Pericentriolar material 1 protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q15154 96 EQAELEKLKQRINFSD HHHHHHHHHHHCCCCH c1d-4 DISO 0.0 Bad: -26.062 cosmic_spacer
2 nes_diso Q15154 235 NVERLTHLIDHLKE HHHHHHHHHHHHHH c3-4 DISO boundary|aProt_lowcomp superfamily; 0.0 Weak: -30.003 Weak|
3 nes_diso Q15154 302 ALLALQHKAEQAIAVMD HHHHHHHHHHHHHHHHC c1c-AT-5 DISO middle|aProt_lowcomp superfamily; 0.0 NA
4 nes_diso Q15154 321 VVAETAGSLSGVSITS HHHHHHCCCCCCCHHH c1a-AT-5 DISO middle|aProt_lowcomp superfamily; 0.0 NA
5 nes_diso Q15154 390 PDEKVELFSKMRVLQ CHHHHHHHHHHHHHH c1b-4 DISO middle|aProt_lowcomp superfamily; 0.0 Bad: -26.985
6 nes_diso Q15154 409 KMDKLLGELHTLRD HHHHHHHHHHHHHH c3-4 DISO middle|aProt_lowcomp superfamily; 0.0 Weak: -32.555 cosmic_spacer Weak|
7 nes_diso Q15154 492 KLNEVRKRLNELRE HHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -26.526 cosmic_spacer
8 nes_diso Q15154 586 NRSAANIRALNMPP CCCHHHHCCCCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
9 nes_diso Q15154 668 KLRQLQDLVAMVQD HHHHHHHHHHHHCC c3-4 DISO 0.0 Weak: -30.674 cosmic_spacer Weak|
10 nes_diso Q15154 755 KLIDIQEKIQALQT HHHHHHHHHHHHHH c3-4 DISO 0.0 Weak: -32.235 cosmic_spacer Weak|
11 nes_diso Q15154 1002 QINQLKKQLDFSVSICQ HHHHHHHHHHHHHHHHH c1c-5 DISO 0.0 Bad: -25.511 cosmic_spacer
12 nes_diso Q15154 1008 KQLDFSVSICQTLMQDQ HHHHHHHHHHHHHHHHH c1cR-4 DISO 0.0 Bad: -23.429
13 nes_diso Q15154 1071 NVQRLKQMLNELMR HHHHHHHHHHHHHH c3-4 DISO 0.0 Medium: -34.824 cosmic_phi_to_LIVMF Medium|
14 nes_diso Q15154 1363 RSTEISSETGSDFSMFE CCCCCCCCCCCCCHHHH c1c-AT-4 DISO boundary|PCM1_C; 0.0 NA
15 nes_diso Q15154 1373 SDFSMFEALRDTIYSEV CCCHHHHHHHHHHHHHH c1cR-4 boundary boundary|PCM1_C; 0.0 Weak: -30.835 cosmic_spacer Weak|
16 nes_diso Q15154 1398 SRPHFLIELFHELQLLN CCCHHHHHHHHHHHHCC c1c-4 boundary middle|PCM1_C; 0.0 Bad: -24.827
17 nes_diso Q15154 1399 RPHFLIELFHELQLLN CCHHHHHHHHHHHHCC c1a-4 boundary middle|PCM1_C; 0.0 Medium: -36.811 Medium|
18 nes_diso Q15154 1402 FLIELFHELQLLNT HHHHHHHHHHHCCC c3-4 boundary middle|PCM1_C; 0.0 Weak: -32.301 Weak|
19 nes_diso Q15154 1513 TVIHLDQALARMRE CHHHHHHHHHHHHH c3-4 DISO middle|PCM1_C; 0.0 Bad: -28.874 cosmic_spacer
20 nes_diso Q15154 1593 LDRQIKAIMKEVIPFLKE HHHHHHHHHHHHHHHHHH c4-4 boundary middle|PCM1_C; 0.0 Bad: -28.573 cosmic_phi_to_LIVMF
21 nes_diso Q15154 1604 VIPFLKEHMDEVCS HHHHHHHHHHHHCC c3-4 boundary middle|PCM1_C; 0.0 Bad: -27.539
22 nes_diso Q15154 1616 CSSQLLTSVRRMVLTL CCHHHHHHHHHHHHHH c1a-4 boundary middle|PCM1_C; 0.0 Weak: -32.372 Weak|
23 nes_diso Q15154 1620 LLTSVRRMVLTLTQ HHHHHHHHHHHHHH c3-4 boundary middle|PCM1_C; 0.0 Medium: -33.316 Medium|
24 nes_diso Q15154 1641 FVKFFHKQLGSILQ HHHHHHHHHHHHHH c3-4 boundary middle|PCM1_C; 0.0 Weak: -31.07 cosmic_spacer Weak|
25 nes_diso Q15154 1668 CGEDLLVEISEVLFNE HCCHHHHHHHHHHHHH c1a-4 boundary middle|PCM1_C; 0.0 Bad: -28.294 cosmic_phi_to_LIVMF
26 nes_diso Q15154 1670 EDLLVEISEVLFNE CHHHHHHHHHHHHH c2-4 boundary middle|PCM1_C; 0.0 Bad: -27.547 cosmic_spacer
27 nes_diso Q15154 1672 LLVEISEVLFNELAFFK HHHHHHHHHHHHHHHHH c1c-5 boundary middle|PCM1_C; 0.0 Bad: -28.559 cosmic_spacer
28 nes_diso Q15154 1675 EISEVLFNELAFFK HHHHHHHHHHHHHH c2-5 boundary middle|PCM1_C; 0.0 Bad: -29.615 cosmic_spacer
29 nes_diso Q15154 1676 ISEVLFNELAFFKLMQ HHHHHHHHHHHHHHHH c1a-4 boundary middle|PCM1_C; 0.0 Weak: -32.791 cosmic_spacer Weak|
30 nes_diso Q15154 1682 NELAFFKLMQDLDNNS HHHHHHHHHHHCCCCH c1aR-4 boundary middle|PCM1_C; 0.0 Medium: -33.412 cosmic_spacer Medium|
31 nes_diso Q15154 1910 EMEPLVPRVKEVKS CCCCCCCCCCCCCC c3-4 DISO middle|PCM1_C; 0.0 Bad: -24.047
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.