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Q15596_NCOA2 | Nuclear receptor coactivator 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q15596 42 ENKYIEELAELIFAN HHHHHHHHHHHHHCC c1b-4 DISO boundary|HLH; boundary|HLH; 0.0 Bad: -29.131
2 nes_diso Q15596 53 IFANFNDIDNFNFKP HHCCCCCCCCCCCCC c1b-5 DISO boundary|HLH; boundary|HLH; boundary|HLH; 0.0 Bad: -25.962 cosmic_spacer
3 nes_diso Q15596 115 LGPMMLEALDGFFFVVN CHHHHHHHHCCEEEEEE c1c-4 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.12 Medium: -35.727 cosmic_spacer Medium|
4 nes_diso Q15596 115 LGPMMLEALDGFFFVV CHHHHHHHHCCEEEEE c1a-4 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.0 Weak: -30.95 cosmic_spacer Weak|
5 nes_diso Q15596 119 MLEALDGFFFVVNLEG HHHHHCCEEEEEECCC c1a-5 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.57 Medium: -35.88 Medium|
6 nes_diso Q15596 151 QEELMNKSVYSILHVGD HHHHCCCCCHHCCCCCC c1c-4 DISO boundary|PAS; middle|PAS; 0.0 Medium: -34.878 cosmic_phi_to_LIVMF Medium|
7 nes_diso Q15596 328 RQGLAFSQIYRFSLSD HCCCCCCCCEEEEECC c1a-AT-4 boundary middle|PAS_11; 0.29 NA cosmic_spacer
8 nes_diso Q15596 329 QGLAFSQIYRFSLSD CCCCCCCCEEEEECC c1b-4 boundary middle|PAS_11; 0.43 NA cosmic_spacer
9 nes_diso Q15596 415 QDMTLSSNINFPINGPK CCCCCCCCCCCCCCCCC c1cR-4 DISO boundary|PAS_11; 0.0 Bad: -22.572 cosmic_spacer
10 nes_diso Q15596 758 GLPEITPKLERLDS CCCCCCCCHHHCCC c3-4 DISO middle|DUF4927; 0.0 Bad: -29.561 cosmic_spacer
11 nes_diso Q15596 802 ELDNLEEILDDLQN HHHHHHHHHHHHHC c3-4 DISO boundary|DUF4927; 0.0 Medium: -34.403 cosmic_spacer Medium|
12 nes_diso Q15596 1079 LLDQLYLALRNFDG HHHHHHHHHHCCCC c3-4 DISO small|Nuc_rec_co-act; 0.0 Bad: -28.241
13 nes_diso Q15596 1089 NFDGLEEIDRALGIPE CCCCHHHHHHHHCCCH c1d-5 DISO small|Nuc_rec_co-act; 0.0 Bad: -21.749
14 nes_diso Q15596 1206 LMNQISNVSNVNLTL HHHHCCCCCCCCCCC c1b-5 DISO 0.0 Medium: -35.447 Medium|
15 nes_diso Q15596 1400 GMSSMNQMTGQISMTS CCCCCCCCCCCCCCCC c1a-AT-5 DISO 0.0 NA cosmic_spacer
16 nes_diso Q15596 1400 GMSSMNQMTGQISMTS CCCCCCCCCCCCCCCC c1d-5 DISO 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.