Q15643 | Thyroid receptor-interacting protein 11

Q15643_TRIPB | Thyroid receptor-interacting protein 11 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	Q15643	15	SLGQVGGSLASLTG	CCCCCCCCHHHCCC	c3-4	DISO		0.0	Weak: -31.231		Weak\|
2	nes_diso	Q15643	22	SLASLTGQISNFTK	CHHHCCCCCCCCHH	c3-4	DISO		0.0	Bad: -27.9
3	nes_diso	Q15643	106	EISHLKARQIALQD	HHHHHHHHHHHHHH	c2-AT-5	DISO	middle\|DUF5401;	0.0	NA	cosmic_spacer S108G;A112S;
4	nes_diso	Q15643	173	EINRLSNEVSRLES	HHHHHHHHHHHHHH	c3-4	DISO	middle\|DUF5401;	0.0	Weak: -32.711	cosmic_spacer N175S;E185Q;E185K;	Weak\|
5	nes_diso	Q15643	210	EICKLQNIIKELKQ	HHHHHHHHHHHHHH	c3-4	DISO	middle\|DUF5401;	0.0	Bad: -27.692
6	nes_diso	Q15643	286	KIYEMQKTIQVLQIEK	HHHHHHHHHHHHHHCH	c1a-5	DISO	middle\|DUF5401; boundary\|Smc;	0.0	Weak: -32.05		Weak\|
7	nes_diso	Q15643	307	KMEQLEDKIKDINK	CCCHHHHHHHHCCC	c3-4	DISO	middle\|DUF5401; boundary\|Smc;	0.0	Bad: -27.157	cosmic_spacer Q310R;
8	nes_diso	Q15643	410	DNSLAEDNLKLKMRIEV	CCCCHHHHHHHHHHHHH	c1c-AT-4	DISO	middle\|DUF5401; middle\|Smc;	0.0	NA
9	nes_diso	Q15643	437	EKEELQMSLLKLNN	HHHHHHHHHHHHCH	c2-4	DISO	middle\|DUF5401; middle\|Smc;	0.0	Weak: -31.811		Weak\|
10	nes_diso	Q15643	451	EYEVIKSTATRDISLDS	HHHHHHHHHHCCCCHHH	c1c-AT-4	DISO	boundary\|DUF5401; middle\|Smc;	0.0	NA	cosmic_spacer D462G;
11	nes_diso	Q15643	461	RDISLDSELHDLRLNL	CCCCHHHHHHHHHHHH	c1a-4	DISO	boundary\|DUF5401; middle\|Smc;	0.0	Medium: -36.212	cosmic_spacer D462G;	Medium\|
12	nes_diso	Q15643	565	IQSEVALNDLHLTK	HHHHHHHHHHHHHH	c2-4	DISO	middle\|Smc;	0.0	Weak: -31.118		Weak\|
13	nes_diso	Q15643	650	EVRNLKQNLSELEQ	HHHHHHHHHHHHHH	c3-4	DISO	middle\|Smc;	0.0	Weak: -32.385	cosmic_phi_to_LIVMF L658F;S659L;	Weak\|
14	nes_diso	Q15643	660	ELEQLNENLKKVAFDV	HHHHHHHHHHHHHHCC	c1a-5	DISO	middle\|Smc;	0.0	Weak: -31.732	cosmic_spacer K669T;D674H;	Weak\|
15	nes_diso	Q15643	705	LEKNTIVETLKMEK	HHHHHHHHHHHHHH	c2-AT-4	DISO	middle\|Smc;	0.0	NA	cosmic_spacer E706Q;M716T;
16	nes_diso	Q15643	748	NARNLNTSALQLEH	HCCCCCCCHHHHHH	c2-AT-4	DISO	middle\|Smc;	0.0	NA
17	nes_diso	Q15643	771	KDMEIAELKKNIEQMD	HHCCHHHHHHHHHHHH	c1aR-5	DISO	middle\|Smc;	0.0	Bad: -24.425	cosmic_spacer K780E;D786Y;
18	nes_diso	Q15643	774	EIAELKKNIEQMDT	CHHHHHHHHHHHHC	c3-4	DISO	middle\|Smc;	0.0	Bad: -24.755	cosmic_spacer K780E;D786Y;
19	nes_diso	Q15643	890	SVTELASEVSQLNT	HHHHHHHHHHHHHH	c3-4	DISO	middle\|Smc; boundary\|SMC_prok_B;	0.0	Medium: -36.866	cosmic_phi_to_LIVMF V898L;Q900E;	Medium\|
20	nes_diso	Q15643	964	EIKSLQKTIEQIKT	HHHHHHHHHHHHHH	c3-4	DISO	middle\|Smc; middle\|SMC_prok_B;	0.0	Medium: -35.926		Medium\|
21	nes_diso	Q15643	993	IFQETKVQSLNIEN	HHHHHCCEEECCCC	c2-AT-5	DISO	middle\|Smc; middle\|SMC_prok_B;	0.43	NA	cosmic_spacer N1003T;
22	nes_diso	Q15643	1064	KDLEIQALHARISSTS	HHHHHHHHHHHHHCCC	c1aR-4	DISO	boundary\|Smc; middle\|SMC_prok_B;	0.0	Bad: -26.402	cosmic_spacer A1073T;S1077L;
23	nes_diso	Q15643	1242	LQEELHQLQAQVLVDS	HHHHHHHHHHHHHHCC	c1d-4	DISO	middle\|SMC_prok_B;	0.0	Weak: -30.469	cosmic_phi_to_LIVMF L1246F;	Weak\|
24	nes_diso	Q15643	1280	KLKNFGQELAQVQH	HHHHHHHHHHHHHH	c3-4	DISO	middle\|SMC_prok_B;	0.0	Bad: -27.207	cosmic_phi F1284C;
25	nes_diso	Q15643	1287	ELAQVQHSIGQLCN	HHHHHHHHHHHHHC	c3-4	DISO	middle\|SMC_prok_B;	0.0	Weak: -30.463		Weak\|
26	nes_diso	Q15643	1300	NTKDLLLGKLDIIS	CHHHHHCCCCCEEC	c2-4	DISO	middle\|SMC_prok_B;	0.0	Strong: -41.529	cosmic_spacer G1307E;	Strong\|
27	nes_diso	Q15643	1443	AVTNLKERILILEMDI	HHHHHHHHHHHHHHHH	c1a-5	DISO	middle\|SMC_prok_B;	0.0	Weak: -32.927	cosmic_spacer R1450I;R1450K;	Weak\|
28	nes_diso	Q15643	1524	ELNQLLNAVKSMQE	HHHHHHHHHHHHHH	c3-4	DISO	middle\|SMC_prok_B;	0.0	Weak: -31.081		Weak\|
29	nes_diso	Q15643	1637	QVESLQEQLNVVSK	HHHHHHHHHHHHHH	c3-4	DISO	middle\|SMC_prok_B;	0.0	Medium: -36.503		Medium\|
30	nes_diso	Q15643	1667	KQYALSLANLQMVL	HHHHHHHHHHHHHH	c2-4	DISO	middle\|SMC_prok_B;	0.0	Weak: -30.83	cosmic_spacer A1674D;	Weak\|
31	nes_diso	Q15643	1669	YALSLANLQMVLEHFQ	HHHHHHHHHHHHHHHH	c1aR-5	DISO	middle\|SMC_prok_B;	0.0	Medium: -34.974	cosmic_spacer A1674D;	Medium\|
32	nes_diso	Q15643	1672	SLANLQMVLEHFQQ	HHHHHHHHHHHHHH	c3-4	DISO	middle\|SMC_prok_B;	0.0	Weak: -31.388	cosmic_spacer A1674D;	Weak\|
33	nes_diso	Q15643	1760	MLDDVQKKLMSLAN	HHHHHHHHHHHHHC	c3-4	boundary	boundary\|SMC_prok_B;	0.0	Medium: -36.048	cosmic_spacer K1766R;	Medium\|
34	nes_diso	Q15643	1775	SEGKVDKVLMRNLFIGH	CCCCCCHHHHHHHHHHH	c1c-4	boundary	boundary\|SMC_prok_B;	0.0	Medium: -34.103		Medium\|
35	nes_diso	Q15643	1778	KVDKVLMRNLFIGH	CCCHHHHHHHHHHH	c2-5	boundary	boundary\|SMC_prok_B;	0.0	Medium: -38.587		Medium\|
36	nes_diso	Q15643	1798	QRHEVLRLMGSILGVRR	HHHHHHHHHHHHHCCCH	c1c-4	boundary		0.0	Medium: -37.971	cosmic_spacer R1804L;	Medium\|
37	nes_diso	Q15643	1801	EVLRLMGSILGVRR	HHHHHHHHHHCCCH	c3-4	boundary		0.0	Bad: -28.514	cosmic_spacer R1804L;
38	nes_diso	Q15643	1852	QQSVVNSSFSELFVKF	CCCCCCCCHHHHHHHH	c1a-4	DISO		0.0	Medium: -36.79		Medium\|
39	nes_diso	Q15643	1943	PGHLLLKPISDVLPTFTP	CCCCCCCCCCCCCCCCCC	c4-4	DISO		0.0	Bad: -22.427	cosmic_spacer L1948V;P1950S;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.