Q15696 | U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2

Q15696_U2AFM | U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	Q15696	197	SPTLLIKSMFTTFGMEQ	CHHHHHHHHCCCCCCHH	c1c-4	boundary	boundary\|RRM_U2AFBPL; boundary\|RRM_1;	0.0	Medium: -33.6	cosmic_phi_to_LIVMF S204N;F209L;M211V;E212K;	Medium\|
2	nes_diso	Q15696	198	PTLLIKSMFTTFGMEQ	HHHHHHHHCCCCCCHH	c1a-4	boundary	boundary\|RRM_U2AFBPL; boundary\|RRM_1;	0.0	Medium: -33.302	cosmic_phi_to_LIVMF S204N;F209L;M211V;E212K;	Medium\|
3	nes_diso	Q15696	198	PTLLIKSMFTTFGMEQ	HHHHHHHHCCCCCCHH	c1aR-4	boundary	boundary\|RRM_U2AFBPL; boundary\|RRM_1;	0.0	Bad: -29.081	cosmic_phi_to_LIVMF S204N;F209L;M211V;E212K;
4	nes_diso	Q15696	235	QFLDFYEDVLPEFKNVG	HHHHHHHHHHHHHHHHC	c1cR-5	boundary	middle\|RRM_U2AFBPL; boundary\|RRM_1;	0.0	Bad: -16.923	cosmic_phi_to_LIVMF F239Y;F239V;E246K;
5	nes_diso	Q15696	243	VLPEFKNVGKVIQFKV	HHHHHHHHCCEEEEEE	c1d-5	boundary	middle\|RRM_U2AFBPL; boundary\|RRM_1;	0.14	Bad: -24.281	cosmic_phi_to_LIVMF E246K;F256L;
6	nes_ord	Q15696	246	EFKNVGKVIQFKVSC	HHHHHCCEEEEEEEC	c1b-5	ORD	middle\|RRM_U2AFBPL; boundary\|RRM_1;	0.57	NA	cosmic_phi_to_LIVMF F256L;S259R;S259I;
7	nes_ord	Q15696	258	VSCNLEPHLRGNVYVQY	EECCCCCCEEEEEEEEE	c1c-4	ORD	middle\|RRM_U2AFBPL; middle\|RRM_1;	0.5	NA	cosmic_spacer S259R;S259I;N261S;N261Y;G268D;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.