Q15742_NAB2 | NGFI-A-binding protein 2   ProteinAtlas   Cosmic   Proviz   Swissmodel

• Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Score(NES)	Cosmic	Score(Cosmic)	TOTALscore(Ebind|Stars)
1	nes_diso	Q15742	23	LQPRLKPSARAMALPR	CCCCCCCCCCCCCCCC	c1a-AT-4	boundary	boundary|NCD1;	0.0	NA
2	nes_diso	Q15742	32	RAMALPRTLGELQLYR	CCCCCCCCHHHHHHHH	c1a-4	boundary	boundary|NCD1;	0.0	Medium: -34.212		cosmic_phi L40P;		Medium|
3	nes_diso	Q15742	76	GEEEFLEIMALVGMAT	CHHHHHHHHHHHCCCC	c1a-4	boundary	middle|NCD1;	0.0	Weak: -30.198		cosmic_spacer A90V;		Weak|
4	nes_diso	Q15742	92	KPLHVRRLQKALREWA	CHHHHHHHHHHHHHHH	c1aR-4	DISO	boundary|NCD1;	0.0	Bad: -22.937		cosmic_spacer R97Q;
5	nes_diso	Q15742	233	GPDRLEPEMVRMVVES	CCCCCCHHHHHHHHHH	c1a-4	DISO	boundary|NCD2;	0.0	Medium: -36.456		cosmic_spacer E238K;E240Q;R243C;		Medium|
6	nes_diso	Q15742	241	MVRMVVESVERIFR	HHHHHHHHHHHHHH	c3-4	DISO	boundary|NCD2;	0.0	Weak: -32.09		cosmic_spacer R243C;		Weak|
7	nes_diso	Q15742	242	VRMVVESVERIFRSFP	HHHHHHHHHHHHHHCC	c1aR-5	DISO	boundary|NCD2;	0.0	Bad: -23.467		cosmic_spacer R254W;R254Q;
8	nes_diso	Q15742	245	VVESVERIFRSFPR	HHHHHHHHHHHCCC	c3-4	DISO	boundary|NCD2;	0.0	Bad: -24.017		cosmic_spacer R254W;R254Q;
9	nes_diso	Q15742	270	LNKKLARSVGHIFEMDD	HHHHHHHHHHHHHHCCC	c1c-4	DISO	middle|NCD2;	0.0	Bad: -28.915
10	nes_diso	Q15742	311	EGKQLSLHELTINE	CCCCCCHHHHHHHH	c2-4	DISO	middle|NCD2;	0.0	Medium: -33.15		cosmic_spacer E319K;		Medium|
11	nes_diso	Q15742	318	HELTINEAAAQFCMRD	HHHHHHHHHHHHHHHC	c1a-AT-4	DISO	middle|NCD2;	0.0	NA		cosmic_spacer E319K;
12	nes_diso	Q15742	332	RDNTLLLRRVELFS	HCHHHHHCHHHHHH	c2-4	DISO	boundary|NCD2;	0.0	Bad: -26.026		cosmic_phi_to_LIVMF R339W;L343I;
13	nes_diso	Q15742	333	DNTLLLRRVELFSLSR	CHHHHHCHHHHHHHHH	c1a-4	DISO	boundary|NCD2;	0.0	Weak: -30.216		cosmic_spacer R339W;L343I;		Weak|
14	nes_diso	Q15742	339	RRVELFSLSRQVARES	CHHHHHHHHHHHHHHH	c1aR-4	DISO	boundary|NCD2;	0.0	Bad: -21.175		cosmic_phi_to_LIVMF L343I;R348H;R352Q;

• candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
• sequence: Hydrophobic positions are colored in red.
• class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
• loc_DISO: location of the segment with respect to the ordered/disordered regions
• loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
• beta: beta-strand content in the middle of the segment
• Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
• Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
• Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
• Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
• TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.