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Q15788_NCOA1 | Nuclear receptor coactivator 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q15788 50 LSANISDIDSLSVKP HHCCHHHCCCCCCCC c1b-4 DISO boundary|HLH; boundary|HLH; 0.0 Medium: -36.516 cosmic_phi_to_LIVMF Medium|
2 nes_diso Q15788 66 KCKILKKTVDQIQLMK HHHHHHHHHHHHHHHH c1a-4 DISO boundary|HLH; boundary|HLH; 0.0 Bad: -22.268 cosmic_phi
3 nes_diso Q15788 112 LGPLLLEALDGFFFVVN HHHHHHHHHCCEEEEEE c1c-4 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.12 Weak: -32.166 cosmic_spacer Weak|
4 nes_diso Q15788 112 LGPLLLEALDGFFFVV HHHHHHHHHCCEEEEE c1a-4 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.0 Weak: -30.064 cosmic_spacer Weak|
5 nes_diso Q15788 113 GPLLLEALDGFFFVVN HHHHHHHHCCEEEEEE c1aR-5 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.14 Weak: -30.324 cosmic_phi_to_LIVMF Weak|
6 nes_diso Q15788 116 LLEALDGFFFVVNC HHHHHCCEEEEEEC c3-4 DISO boundary|HLH; boundary|HLH; boundary|PAS; boundary|PAS; 0.43 Medium: -35.974 cosmic_spacer Medium|
7 nes_diso Q15788 148 QEELMNTSVYSILHVGD HHHHCCCCHHHHCCCCC c1c-4 boundary boundary|PAS; middle|PAS; 0.0 Medium: -34.432 cosmic_phi_to_LIVMF Medium|
8 nes_diso Q15788 350 QSPDMQPFIMGIHIID CCCCCCCEEEEEEEEE c1a-4 boundary boundary|PAS_11; 0.57 NA cosmic_spacer
9 low complexity Q15788 353 DMQPFIMGIHIIDR CCCCEEEEEEEEEE c3-4 boundary boundary|PAS_11; 0.86 NA cosmic_spacer
10 nes_diso Q15788 504 PNNSFPPNISTLSSPVGM CCCCCCCCCCCCCCCCCC c4-4 DISO middle|NCOA_u2; 0.0 Bad: -17.573 cosmic_phi_to_LIVMF
11 nes_diso Q15788 762 STPNLSLDDVKVKV CCCCCCCCCCCCCC c2-4 DISO middle|DUF4927 superfamily; 0.0 Weak: -30.591 cosmic_phi_to_LIVMF Weak|
12 nes_diso Q15788 764 PNLSLDDVKVKVEKKE CCCCCCCCCCCCCCCC c1aR-4 DISO middle|DUF4927 superfamily; 0.0 Bad: -22.209 cosmic_phi_to_LIVMF
13 nes_diso Q15788 832 ETDRMDGAVTSVTIKS CCCCCCCCCCCCCCCC c1a-4 DISO boundary|DUF4927 superfamily; 0.0 Medium: -37.269 Medium|
14 nes_diso Q15788 869 PELELEAIDNQFGQPG CHHHCCCCCCCCCCCC c1aR-4 DISO 0.0 Bad: -21.292 cosmic_spacer
15 nes_diso Q15788 944 DETELAELDRALGIDK CHHHHHHHHHHHCCCC c1d-4 DISO small|Nuc_rec_co-act; 0.0 Medium: -33.922 Medium|
16 nes_diso Q15788 1086 VGINMRSGMQQQITPQP CCCCCCCCCCCCCCCCC c1cR-4 DISO 0.0 Bad: -24.645 cosmic_spacer
17 nes_diso Q15788 1307 AQPGVYNNMSITVSMAG CCCCCCCCCCCCCCCCC c1c-4 DISO 0.0 Medium: -33.426 cosmic_phi_to_LIVMF Medium|
18 nes_diso Q15788 1327 NVQNMNPMMAQMQMSS CCCCCCCCCCCCCCCC c1a-5 DISO 0.0 Strong: -41.089 cosmic_phi_to_LIVMF Strong|
19 nes_diso Q15788 1334 MMAQMQMSSLQMPG CCCCCCCCCCCCCC c2-5 DISO 0.0 Medium: -36.223 cosmic_phi_to_LIVMF Medium|
20 nes_beta_diso Q15788 1388 QQVQVFADVQCTVNLVG EEEEEEEEEEEEEEEEC c1c-4 DISO 1.0 NA cosmic_spacer
21 nes_beta_diso Q15788 1392 VFADVQCTVNLVGG EEEEEEEEEEEECC c3-4 DISO 1.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.