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Q16665_HIF1A | Hypoxia-inducible factor 1-alpha   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: validNES:P182
  • PMIDs: 18687685
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): -
  • Mutation(bind): -
  • Functional seq: -
  • Sites: 616-658


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q16665 56 KASVMRLTISYLRVRK HHHHHHHHHHHHHHHH c1a-4 DISO boundary|HLH; 0.0 Bad: -24.701 cosmic_spacer_Pro
2 nes_diso Q16665 58 SVMRLTISYLRVRK HHHHHHHHHHHHHH c2-5 DISO boundary|HLH; 0.0 Weak: -31.338 cosmic_spacer_Pro Weak|
3 nes_diso Q16665 69 VRKLLDAGDLDIED HHHHHCCCCCCCCH c2-AT-4 boundary boundary|HLH; boundary|PAS; 0.0 Bad: -29.016 cosmic_spacer
4 nes_diso Q16665 80 IEDDMKAQMNCFYLKA CCHHHHHHHHHHHHHH c1a-4 boundary boundary|HLH; boundary|PAS; 0.0 Bad: -29.73 cosmic_spacer
5 nes_diso Q16665 89 NCFYLKALDGFVMVLT HHHHHHHCCCEEEEEE c1aR-5 boundary boundary|HLH; boundary|PAS; 0.14 Medium: -36.084 cosmic_phi Medium|
6 nes_diso Q16665 92 YLKALDGFVMVLTD HHHHCCCEEEEEEC c3-4 boundary boundary|HLH; boundary|PAS; 0.43 Weak: -31.005 cosmic_phi Weak|
7 nes_diso Q16665 108 DMIYISDNVNKYMGLTQ CEEEEECCHHHHCCCCH c1c-5 boundary boundary|PAS; 0.25 Bad: -26.52 cosmic_spacer
8 nes_diso Q16665 116 VNKYMGLTQFELTG HHHHCCCCHHHHCC c2-4 boundary boundary|PAS; 0.0 Bad: -24.945 cosmic_phi
9 nes_beta_diso Q16665 187 ATWKVLHCTGHIHVYD CCEEEEEEEEEEEECC c1a-AT-4 boundary 1.0 Weak: -30.607 cosmic_spacer
10 nes_beta_diso Q16665 334 CIVCVNYVVSGIIQ EEEEEEEEEECCCC c3-4 boundary boundary|PAS; boundary|PAS_3; 1.0 NA cosmic_phi
11 nes_diso Q16665 338 VNYVVSGIIQHDLIFSL EEEEEECCCCCCEEEEH c1c-4 boundary boundary|PAS; boundary|PAS_3; 0.25 Bad: -28.533 cosmic_spacer
12 nes_diso Q16665 367 SDMKMTQLFTKVESED CCCCHHHCCCCCCCCC c1aR-4 DISO boundary|PAS; boundary|PAS_3; 0.0 Medium: -37.444 cosmic_phi_to_LIVMF Medium|
13 nes_diso Q16665 400 LAPAAGDTIISLDFGS CCCCCCCEEEECCCCC c1a-AT-4 DISO 0.57 Bad: -27.227 cosmic_spacer
14 nes_diso Q16665 462 LRSSADPALNQEVALKL CCCCCCHHHHHHHHHCC c1c-AT-4 DISO 0.0 Bad: -17.657 cosmic_spacer
15 nes_diso Q16665 519 YCFYVDSDMVNEFKLEL HCCCCCHHHHHCCCHHH c1c-4 DISO 0.0 Bad: -23.758
16 nes_diso Q16665 529 NEFKLELVEKLFAEDT HCCCHHHHHHHHHCCC c1aR-4 DISO 0.0 Bad: -23.989
17 nes_diso Q16665 555 TDLDLEMLAPYIPMDD CCCCHHHHCCCCCCCC c1aR-4 DISO small|HIF-1; 0.0 Bad: -21.349 cosmic_spacer
18 nes_diso Q16665 624 LKTVTKDRMEDIKILI
................		 HCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 Weak: -31.301 cosmic_spacer Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.