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Q68CP9_ARID2 | AT-rich interactive domain-containing protein 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_ord Q68CP9 43 KELDLHGLYTRVTTLG EEEEHHHHHHHHHHHC c1aR-5 ORD middle|ARID_ARID2; 0.0 Medium: -33.075
2 nes_ord Q68CP9 46 DLHGLYTRVTTLGG EHHHHHHHHHHHCC c3-4 ORD middle|ARID_ARID2; 0.0 Medium: -34.415
3 nes_diso Q68CP9 158 YNKLVLSLLSGLPNEVDF CHHHHHHHCCCCCCHHHH c4-4 boundary 0.0 Bad: -24.094 cosmic_phi_to_LIVMF
4 nes_diso Q68CP9 165 LLSGLPNEVDFAINVCT HCCCCCCHHHHHHHHHH c1c-5 boundary 0.0 Weak: -30.043 cosmic_phi_to_LIVMF Weak|
5 nes_diso Q68CP9 171 NEVDFAINVCTLLSNES CHHHHHHHHHHHHCCCC c1cR-4 boundary 0.0 NA cosmic_phi_to_LIVMF
6 nes_diso Q68CP9 285 RVLQIAVILRNLSFEE HHHHHHHHHHHCCCCH c1a-5 boundary 0.0 Medium: -35.405 cosmic_phi Medium|
7 nes_ord Q68CP9 307 AANRTCLRFLLLSA HCCCCHHHHHHHHH c2-AT-4 ORD 0.0 NA cosmic_spacer
8 nes_ord Q68CP9 321 HSHFISLRQLGLDT CCCCHHHHHHHHHH c2-4 ORD 0.0 Bad: -27.3 cosmic_phi_to_LIVMF
9 nes_ord Q68CP9 330 LGLDTLGNIAAELLLDP HHHHHHHHHHHHHCCCC c1c-AT-4 ORD 0.0 NA cosmic_spacer
10 nes_ord Q68CP9 331 GLDTLGNIAAELLLDP HHHHHHHHHHHHCCCC c1a-AT-5 ORD 0.0 NA cosmic_spacer
11 nes_ord Q68CP9 331 GLDTLGNIAAELLLDP HHHHHHHHHHHHCCCC c1d-5 ORD 0.0 NA cosmic_phi_to_LIVMF
12 nes_ord Q68CP9 343 LLDPVDFKTTHLMFHT CCCCCCCHHHHHHHHH c1a-AT-5 ORD 0.0 NA cosmic_spacer
13 nes_ord Q68CP9 352 THLMFHTVTKCLMSRD HHHHHHHHHHHHHCCC c1aR-4 ORD 0.0 Weak: -32.953 cosmic_phi_to_LIVMF
14 nes_ord Q68CP9 366 RDRFLKMRGMEILG CCHHHHHHHHHHHH c2-4 ORD 0.0 Weak: -31.062 cosmic_phi
15 nes_ord Q68CP9 408 TLPDVLLVISTLEVLY CHHHHHHHHHHHHHHH c1a-5 ORD 0.0 NA cosmic_phi_to_LIVMF
16 nes_ord Q68CP9 411 DVLLVISTLEVLYMLT HHHHHHHHHHHHHHHH c1a-5 ORD 0.0 NA cosmic_phi
17 nes_ord Q68CP9 417 STLEVLYMLTEMGDVA HHHHHHHHHHHCHHHH c1aR-5 ORD 0.0 NA cosmic_spacer
18 nes_ord Q68CP9 420 EVLYMLTEMGDVAC HHHHHHHHCHHHHH c3-4 ORD 0.0 NA cosmic_spacer
19 nes_diso Q68CP9 435 KIAKVEKSIDMLVCLVS HHHHCCCHHHHHHHHHH c1c-5 boundary 0.0 Weak: -30.37 cosmic_phi Weak|
20 nes_diso Q68CP9 435 KIAKVEKSIDMLVC HHHHCCCHHHHHHH c3-4 boundary 0.0 Weak: -31.942 cosmic_phi Weak|
21 nes_diso Q68CP9 439 VEKSIDMLVCLVSMDI CCCHHHHHHHHHHHCH c1a-4 boundary 0.0 Weak: -31.676 cosmic_phi_to_LIVMF Weak|
22 nes_diso Q68CP9 441 KSIDMLVCLVSMDIQM CHHHHHHHHHHHCHHH c1a-4 boundary 0.0 NA cosmic_phi_to_LIVMF
23 nes_diso Q68CP9 441 KSIDMLVCLVSMDI CHHHHHHHHHHHCH c2-4 boundary 0.0 NA cosmic_phi_to_LIVMF
24 nes_diso Q68CP9 442 SIDMLVCLVSMDIQMFG HHHHHHHHHHHCHHHHC c1c-5 boundary 0.0 NA cosmic_phi_to_LIVMF
25 nes_diso Q68CP9 443 IDMLVCLVSMDIQMFG HHHHHHHHHHCHHHHC c1aR-5 boundary 0.0 NA cosmic_phi_to_LIVMF
26 nes_diso Q68CP9 443 IDMLVCLVSMDIQM HHHHHHHHHHCHHH c2-4 boundary 0.0 NA cosmic_phi_to_LIVMF
27 nes_diso Q68CP9 445 MLVCLVSMDIQMFGPD HHHHHHHHCHHHHCCC c1aR-4 boundary 0.0 NA cosmic_phi_to_LIVMF
28 nes_diso Q68CP9 446 LVCLVSMDIQMFGP HHHHHHHCHHHHCC c3-4 boundary 0.0 NA cosmic_phi_to_LIVMF
29 nes_diso Q68CP9 453 DIQMFGPDALAAVKLIE CHHHHCCCHHEEEEEEE c1c-AT-5 boundary 0.25 NA cosmic_spacer
30 nes_diso Q68CP9 520 SEKFACQWLNAHFEVNP CHHHHHHHHHHHCCCCC c1c-AT-4 DISO boundary|RFX_DNA_binding; 0.0 NA cosmic_spacer
31 nes_beta_diso Q68CP9 588 SNGQAHIHVVGVKR CCCCCEEEEECCEE c2-AT-4 DISO boundary|RFX_DNA_binding; 0.71 NA cosmic_spacer
32 nes_diso Q68CP9 613 QQQPVSTSVVRVDS CCCCCCCCCCCCCC c2-AT-4 DISO boundary|RFX_DNA_binding; boundary|EP400_N superfamily; 0.0 NA cosmic_spacer
33 nes_diso Q68CP9 658 QSSNLTATQMSFPV CCCCCCCCCCCCCC c2-AT-4 DISO middle|EP400_N superfamily; 0.0 NA cosmic_spacer
34 nes_diso Q68CP9 673 GVHTVAQTVSRIPQ CCCCCCCCCCCCCC c3-4 DISO middle|EP400_N superfamily; 0.0 Bad: -25.655 cosmic_spacer
35 nes_diso Q68CP9 866 SVQNFQVATGQMVTIAG CCCCCCCCCCCCCCCCC c1c-AT-5 DISO middle|EP400_N superfamily; 0.0 NA cosmic_spacer
36 nes_diso Q68CP9 1139 GVQTVPISNLQILP CCCCCCCCCCCCCC c2-5 DISO 0.0 Strong: -51.31 cosmic_spacer Strong|
37 nes_diso Q68CP9 1342 EQIDMQDIKSDLRKPL CCCCCCCCCCCCCCCC c1aR-4 DISO 0.0 Bad: -23.365 cosmic_phi_to_LIVMF
38 nes_beta_diso Q68CP9 1530 IPNKVGVRIVTISD CCCCCEEEEEEECC c2-4 DISO 0.71 NA cosmic_spacer
39 nes_diso Q68CP9 1807 ASSTLAKCLYELNFTV HHHHHHHHHHHHHHCC c1a-4 DISO 0.0 Medium: -37.099 cosmic_phi Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.