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Q86U86_PB1 | Protein polybromo-1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q86U86 40 NLPTVDPIAVCH CCCCCCHHHHHH c2-rev boundary boundary|Bromo_polybromo_I; 0.0 Bad: -24.547 cosmic_phi_to_LIVMF
2 nes_ord Q86U86 84 YYEVVSQPIDLMKIQQ HHHHCCCCCCHHHHHH c1a-4 ORD middle|Bromo_polybromo_I; 0.0 NA cosmic_spacer
3 nes_ord Q86U86 90 QPIDLMKIQQKLKMEE CCCCHHHHHHHHHCCC c1aR-4 ORD middle|Bromo_polybromo_I; 0.0 NA cosmic_phi
4 nes_ord Q86U86 108 DVNLLTADFQLLFN CHHHHHHHHHHHHH c3-4 ORD middle|Bromo_polybromo_I; 0.0 NA cosmic_phi
5 nes_diso Q86U86 181 YLKEILEQLLEAIVVAT HHHHHHHHHHHHHHHCC c1c-5 boundary boundary|Bromo_polybromo_I; boundary|Bromo_polybromo_II; 0.0 Weak: -32.014 cosmic_spacer_Pro Weak|
6 nes_diso Q86U86 182 LKEILEQLLEAIVVAT HHHHHHHHHHHHHHCC c1a-4 boundary boundary|Bromo_polybromo_I; boundary|Bromo_polybromo_II; 0.0 Weak: -32.395 cosmic_phi Weak|
7 nes_ord Q86U86 200 SGRLISELFQKLPSKVQY CCCCCCHHHHHCCCCCCC c4-4 ORD boundary|Bromo_polybromo_II; 0.0 Bad: -24.496 cosmic_phi_to_LIVMF
8 nes_ord Q86U86 226 EPIDLKTIAQRIQNGS CCCCHHHHHHHHHCCC c1aR-4 ORD middle|Bromo_polybromo_II; 0.0 Bad: -25.597 cosmic_phi
9 nes_ord Q86U86 244 SIHAMAKDIDLLAK CHHHHHHHHHHHHH c3-4 ORD middle|Bromo_polybromo_II; 0.0 Weak: -31.572 cosmic_phi
10 nes_diso Q86U86 338 QGGRLSAITMALQY CCCCCCHHHHHHCC c2-AT-4 DISO 0.0 NA
11 nes_diso Q86U86 378 SFMDVSNPFYQLYD CCCCCCHHHHHHHH c3-4 boundary boundary|Bromo_polybromo_III; 0.0 Bad: -28.669 cosmic_spacer
12 nes_ord Q86U86 426 MPISLQQIRTKLKNQE CCCCHHHHHHHHHCCC c1aR-4 ORD middle|Bromo_polybromo_III; 0.0 Weak: -31 cosmic_phi_to_LIVMF
13 nes_ord Q86U86 444 TLDHLECDLNLMFE CHHHHHHHHHHHHH c3-4 ORD middle|Bromo_polybromo_III; 0.0 Medium: -35.143 cosmic_spacer
14 nes_diso Q86U86 519 RKQRMKILFNVVLEA HHHHHHHHHHHHHHH c1b-4 boundary boundary|Bromo_polybromo_III; boundary|Bromo_polybromo_IV; 0.0 Medium: -38.99 cosmic_phi_to_LIVMF Medium|
15 nes_ord Q86U86 564 EPMDLKIIEHNIRNDK CCCCHHHHHHHHHCCC c1aR-4 ORD middle|Bromo_polybromo_IV; 0.0 Bad: -23.662 cosmic_phi_to_LIVMF
16 nes_diso Q86U86 654 YMTPMQQKLNEVYE CCCHHHHHHHHHHH c3-4 boundary boundary|Bromo_polybromo_IV; boundary|Bromo_polybromo_V; 0.0 Bad: -23.96 cosmic_phi
17 nes_diso Q86U86 676 RGRRLSAIFLRLPS CCCCCCHHHHCCCC c2-AT-4 boundary boundary|Bromo_polybromo_V; 0.0 NA cosmic_spacer
18 nes_diso Q86U86 702 KPMDMEKIRSHMMANK CCCCHHHHHHHHHCCC c1aR-4 boundary middle|Bromo_polybromo_V; 0.0 Bad: -24.936 cosmic_phi
19 nes_diso Q86U86 717 KYQDIDSMVEDFVMMFN CCCCHHHHHHHHHHHHH c1c-4 boundary middle|Bromo_polybromo_V; 0.0 Bad: -23.794 cosmic_phi_to_LIVMF
20 nes_diso Q86U86 717 KYQDIDSMVEDFVMMF CCCCHHHHHHHHHHHH c1a-4 boundary middle|Bromo_polybromo_V; 0.0 Bad: -24.654 cosmic_phi
21 nes_diso Q86U86 720 DIDSMVEDFVMMFN CHHHHHHHHHHHHH c3-4 boundary middle|Bromo_polybromo_V; 0.0 Strong: -41.8 cosmic_phi_to_LIVMF Strong|
22 nes_diso Q86U86 746 YKDALVLHKVLLET HHHHHHHHHHHHHH c2-4 boundary boundary|Bromo_polybromo_V; boundary|Bromo_polybromo_VI; 0.0 Bad: -28.965 cosmic_phi
23 nes_diso Q86U86 770 HVPNVTLLIQELIH CCCCHHHHHHHHHH c3-4 boundary boundary|Bromo_polybromo_V; boundary|Bromo_polybromo_VI; 0.0 Bad: -25.989 cosmic_phi
24 nes_diso Q86U86 773 NVTLLIQELIHNLFVSV CHHHHHHHHHHHHHHHH c1c-5 boundary boundary|Bromo_polybromo_V; boundary|Bromo_polybromo_VI; 0.0 Strong: -48.466 cosmic_phi Strong|
25 nes_diso Q86U86 774 VTLLIQELIHNLFVSV HHHHHHHHHHHHHHHH c1a-4 __ boundary|Bromo_polybromo_V; boundary|Bromo_polybromo_VI; 0.0 Medium: -34.998 cosmic_phi Medium|
26 nes_diso Q86U86 774 VTLLIQELIHNLFVSV HHHHHHHHHHHHHHHH c1aR-4 __ boundary|Bromo_polybromo_V; boundary|Bromo_polybromo_VI; 0.0 Weak: -32.509 cosmic_phi Weak|
27 nes_diso Q86U86 818 PPLTFDIIRKNVENNR CCCCHHHHHHHHHCCC c1aR-4 boundary middle|Bromo_polybromo_VI; 0.0 Bad: -12.842 cosmic_spacer
28 nes_ord Q86U86 836 RLDLFQEHMFEVLE CHHHHHHHHHHHHH c3-4 ORD middle|Bromo_polybromo_VI; 0.0 NA cosmic_phi_to_LIVMF
29 nes_diso Q86U86 862 YEDAVELQQFFIKI HHHHHHHHHHHHHH c2-4 boundary boundary|Bromo_polybromo_VI; 0.0 Weak: -32.634 cosmic_phi_to_LIVMF Weak|
30 nes_diso Q86U86 864 DAVELQQFFIKIRDEL HHHHHHHHHHHHHHHH c1aR-4 boundary boundary|Bromo_polybromo_VI; 0.0 Bad: -29.043 cosmic_phi_to_LIVMF
31 nes_diso Q86U86 953 FKNSMYHVGDYVYVEP ECCEEEECCCEEEEEC c1d-4 boundary boundary|BAH_polybromo; 0.57 NA cosmic_phi_to_LIVMF
32 nes_ord Q86U86 1024 NKVPVSKILGKCVVMFV CEEEHHHCCCCEEEEEH c1c-4 ORD middle|BAH_polybromo; 0.12 NA cosmic_phi
33 nes_ord Q86U86 1032 LGKCVVMFVKEYFKLCP CCCEEEEEHHHHHHCCC c1c-4 ORD middle|BAH_polybromo; 0.5 NA cosmic_spacer
34 nes_diso Q86U86 1074 KLWTMPISSVRFVP ECCCCCCCCCEECC c2-5 boundary boundary|BAH_polybromo; 0.0 Medium: -34.972 Medium|
35 nes_beta_diso Q86U86 1152 HYNDMWLKVGDCVFIKS EECCEEEEECCEEEECC c1c-4 boundary boundary|BAH_polybromo; 0.75 NA cosmic_phi
36 nes_diso Q86U86 1267 QMKKFKGLKRFSLSA CCCCCCCCCCCCCCC c1b-5 boundary boundary|BAH_polybromo; 0.0 Medium: -33.053 cosmic_phi Medium|
37 nes_diso Q86U86 1280 SAKVVDDEIYYFRKPIVP CCCCCCCCCCCCCCCCCC c4-4 DISO boundary|BAH_polybromo; 0.0 Bad: -21.266 cosmic_spacer
38 nes_diso Q86U86 1308 KIQLLEAKFAELEG HHHHHHHHHHHHCC c3-4 DISO 0.0 Strong: -43.572 cosmic_phi Strong|
39 nes_diso Q86U86 1341 SLPQLQTPLASELDLMP CCCCCCCCCCCCCCCCC c1c-5 DISO boundary|HMG; 0.0 Weak: -30.948 cosmic_spacer Weak|
40 nes_diso Q86U86 1385 GYILFSSEMRAVIKAQH CCCCCCHHHHHHHHHCC c1cR-4 DISO boundary|HMG; boundary|HMG-box; 0.0 Bad: -26.567 cosmic_spacer
41 nes_diso Q86U86 1452 ASPRAGTPVGALMGVVP CCCCCCCCCCCCCCCCC c1c-AT-4 DISO boundary|HMG; boundary|HMG-box; 0.0 NA
42 nes_diso Q86U86 1493 GLPPLQGPVDGLVSMGS CCCCCCCCCCCCCCCCC c1c-5 DISO 0.0 Bad: -24.069 cosmic_spacer
43 nes_diso Q86U86 1493 GLPPLQGPVDGLVS CCCCCCCCCCCCCC c3-4 DISO 0.0 Bad: -20.957 cosmic_spacer
44 nes_diso Q86U86 1661 TMADALWRLRDLMLRD CHHHHHHHHHHHHHHH c1a-AT-5 boundary 0.0 NA cosmic_spacer_Pro
45 nes_diso Q86U86 1662 MADALWRLRDLMLRD HHHHHHHHHHHHHHH c1b-4 boundary 0.0 NA cosmic_spacer_Pro
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.