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Q86YC2_PALB2 | Partner and localizer of BRCA2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q86YC2 160 RDCVFGTDSLRLSG CCCCCCCCHHCCCC c2-AT-4 DISO 0.0 NA
2 nes_diso Q86YC2 191 PVTEIRTHLLSLKS CCCCCCCCCCCCCC c3-4 DISO 0.0 Weak: -31.479 Weak|
3 nes_diso Q86YC2 270 SSELTTHDLKNIRFTS CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA
4 nes_diso Q86YC2 292 QGKKMTVSTDNLLVNK CCCEEEEECCCHHHCC c1a-AT-4 DISO 0.57 NA
5 nes_diso Q86YC2 421 RKVAVEAVIQSHLDVKK CCCCHHHHHHHHCCCCC c1c-4 DISO 0.0 Bad: -29.155 cosmic_spacer
6 nes_diso Q86YC2 527 CEPLLPTSSLSIVN CCCCCCCCCCCCCC c2-AT-4 DISO 0.0 NA
7 nes_diso Q86YC2 596 GMLSLKQLLSFLSITD CCCCHHHHHCCCCCCC c1a-5 DISO 0.0 Strong: -44.679 cosmic_phi_to_LIVMF Strong|
8 nes_diso Q86YC2 603 LLSFLSITDFQLPD HHCCCCCCCCCCCC c2-5 DISO 0.0 Bad: -23.741 cosmic_phi_to_LIVMF
9 nes_diso Q86YC2 667 EMEDLEEDLIVLPG HHHHHHHCCCCCCC c3-4 DISO 0.0 Medium: -34.146 Medium|
10 nes_diso Q86YC2 690 QSQHTKTGLSSSILLYT CCCCCCCCCCCCCEEEC c1c-AT-4 DISO 0.0 NA
11 nes_diso Q86YC2 756 CTPQLAHLKDSVCLAS CCCCHHHCCCCCCCCC c1d-4 DISO 0.0 Bad: -27.987
12 nes_diso Q86YC2 805 VPPGTPPPIESFTFKE CCCCCCCCHHHCCHHH c1a-AT-4 DISO 0.0 NA
13 nes_diso Q86YC2 921 QIVPVPDVYNLVCVAL EEEECCCCCCEEEEEC c1d-5 boundary middle|PALB2_WD40; 0.14 Medium: -37.918 cosmic_spacer Medium|
14 nes_diso Q86YC2 928 VYNLVCVALGNLEIRE CCCEEEEECCCCCCEE c1a-4 boundary middle|PALB2_WD40; 0.57 NA cosmic_spacer
15 nes_diso Q86YC2 930 NLVCVALGNLEIRE CEEEEECCCCCCEE c2-5 boundary middle|PALB2_WD40; 0.43 Bad: -28.048 cosmic_spacer
16 nes_beta_diso Q86YC2 937 GNLEIREIRALFCSSD CCCCCEEEEEEEECCC c1aR-4 boundary middle|PALB2_WD40; 0.86 NA cosmic_phi
17 nes_diso Q86YC2 1023 QEALLGTTIMNNIVIWN CCCCCCEECCCCEEEEE c1c-4 boundary middle|PALB2_WD40; 0.25 Bad: -27.358 cosmic_spacer
18 nes_ord Q86YC2 1038 WNLKTGQLLKKMHIDD EECCCCCEEEEEECCC c1a-AT-4 ORD middle|PALB2_WD40; 0.57 NA cosmic_spacer
19 nes_diso Q86YC2 1055 YQASVCHKAYSEMGLLF CCCCHHHHHHCCCEEEE c1c-AT-4 boundary middle|PALB2_WD40; 0.0 NA cosmic_spacer
20 nes_beta_diso Q86YC2 1063 AYSEMGLLFIVLSH HHCCCEEEEEEECC c2-4 boundary middle|PALB2_WD40; 0.71 Medium: -33.331 cosmic_spacer_Pro
21 nes_diso Q86YC2 1081 ESESLRSPVFQLIVINP CCHHHCCCCEEEEEECC c1c-4 boundary middle|PALB2_WD40; 0.38 Bad: -27.202 cosmic_phi
22 nes_diso Q86YC2 1081 ESESLRSPVFQLIVIN CCHHHCCCCEEEEEEC c1a-4 boundary middle|PALB2_WD40; 0.29 Bad: -27.132 cosmic_spacer
23 nes_diso Q86YC2 1091 QLIVINPKTTLSVGVML EEEEECCCCCCEEEEEE c1c-AT-5 boundary middle|PALB2_WD40; 0.25 NA cosmic_spacer
24 nes_beta_diso Q86YC2 1099 TTLSVGVMLYCLPPGQ CCCEEEEEEEECCCCC c1aR-4 boundary middle|PALB2_WD40; 1.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.