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Q8N3U4_STAG2 | Cohesin subunit SA-2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q8N3U4 79 VENMMLFEVVKMGK CCCCCHHHHHHCCC c2-4 boundary 0.0 Bad: -28.418 cosmic_phi
2 nes_diso Q8N3U4 110 RDIALLDLINFFIQCS HHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Weak: -31.746 cosmic_spacer Weak|
3 low complexity Q8N3U4 111 DIALLDLINFFIQC HHHHHHHHHHHHHH c2-5 boundary 0.0 Medium: -33.838 cosmic_spacer
4 nes_ord Q8N3U4 167 QWKKFKSSFCEFIGVLV HHHHHHHHHHHHHHHHH c1c-4 ORD boundary|STAG; 0.0 Medium: -37.212 cosmic_spacer
5 nes_ord Q8N3U4 196 MMDTVISLLTGLSD HHHHHHHHHHHHCC c3-4 ORD middle|STAG; 0.0 NA cosmic_phi_to_LIVMF
6 nes_diso Q8N3U4 222 AAMKLMTALVNVALNL HHHHHHHHHHHHHHHH c1a-4 boundary middle|STAG; 0.0 Medium: -33.84 cosmic_phi Medium|
7 nes_diso Q8N3U4 223 AMKLMTALVNVALNLSI HHHHHHHHHHHHHHHHH c1c-5 boundary middle|STAG; 0.0 Medium: -33.239 cosmic_phi_to_LIVMF Medium|
8 nes_diso Q8N3U4 227 MTALVNVALNLSINMDN HHHHHHHHHHHHHHHHH c1c-4 boundary middle|STAG; 0.0 Weak: -30.411 cosmic_phi Weak|
9 nes_diso Q8N3U4 252 RNKMIGKRANERLELLL HHHHHCCHHHHHHHHHH c1c-AT-4 __ boundary|STAG; 0.0 NA cosmic_spacer
10 nes_diso Q8N3U4 280 EIENMMNAIFKGVFVHR HHHHHHHHHHHHHHHHC c1c-5 boundary boundary|STAG; 0.0 Medium: -34.788 cosmic_phi Medium|
11 nes_diso Q8N3U4 281 IENMMNAIFKGVFVHR HHHHHHHHHHHHHHHC c1a-4 boundary boundary|STAG; 0.0 Medium: -33.285 cosmic_phi Medium|
12 nes_ord Q8N3U4 296 RYRDAIAEIRAICIEE CHHHCCHHHHHHHHHH c1a-AT-4 ORD boundary|STAG; 0.0 NA cosmic_spacer
13 nes_ord Q8N3U4 297 YRDAIAEIRAICIEE HHHCCHHHHHHHHHH c1b-4 ORD boundary|STAG; 0.0 NA cosmic_spacer
14 nes_ord Q8N3U4 303 EIRAICIEEIGIWM HHHHHHHHHHHHHH c2-5 ORD 0.0 NA cosmic_phi_to_LIVMF
15 nes_ord Q8N3U4 367 FTSRFKDRIVSMTLDK HHHHHHHHHHHHHCCC c1a-4 ORD 0.0 NA cosmic_phi_to_LIVMF
16 nes_ord Q8N3U4 382 KEYDVAVQAIKLLT CCHHHHHHHHHHHH c2-4 ORD 0.0 Medium: -35.835 cosmic_phi_to_LIVMF
17 nes_ord Q8N3U4 387 AVQAIKLLTLVLQS HHHHHHHHHHHHCC c2-5 ORD 0.0 Bad: -28.286 cosmic_phi_to_LIVMF
18 nes_diso Q8N3U4 456 PNANLVKTLVFFFLES CCHHHHHHHHHHHHHC c1a-4 boundary 0.0 Medium: -35.973 cosmic_spacer Medium|
19 nes_diso Q8N3U4 462 KTLVFFFLESELHEHA HHHHHHHHHCCCHHHH c1aR-4 boundary 0.0 Weak: -30.023 cosmic_spacer Weak|
20 nes_diso Q8N3U4 559 DRTKITELFAVALPQ HHHHHHHHHHHHHHH c1b-4 boundary 0.0 Medium: -34.75 cosmic_phi Medium|
21 nes_ord Q8N3U4 608 HLDALLRQIRNIVE HHHHHHHHHHHHHH c3-4 ORD 0.0 NA
22 nes_ord Q8N3U4 640 CNEEFTIFNRVDISR CCCCCHHHHHHHHHH c1b-4 ORD 0.0 NA cosmic_spacer
23 nes_diso Q8N3U4 657 LIDELADKFNRLLE HHHHHHHHHHHHHH c3-4 boundary 0.0 Strong: -44.347 cosmic_spacer Strong|
24 nes_diso Q8N3U4 757 DLLRLKKQMRVFCQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -36.285 cosmic_spacer Medium|
25 nes_ord Q8N3U4 783 VKEQAFTILCDILMIFS HHHHHHHHHHHHHHHHC c1c-AT-4 ORD 0.0 NA cosmic_spacer
26 nes_ord Q8N3U4 783 VKEQAFTILCDILMIF HHHHHHHHHHHHHHHH c1a-AT-4 ORD 0.0 NA cosmic_spacer
27 low complexity Q8N3U4 787 AFTILCDILMIFSH HHHHHHHHHHHHCC c3-4 ORD 0.0 Bad: -28.152 cosmic_phi
28 nes_diso Q8N3U4 817 PDSSLQSELLSFILDH CCHHHHHHHHHHHHHH c1a-4 boundary 0.0 Weak: -31.747 cosmic_phi_to_LIVMF Weak|
29 nes_diso Q8N3U4 821 LQSELLSFILDHVFIEQ HHHHHHHHHHHHCCCCC c1c-4 boundary 0.0 Medium: -34.334 cosmic_phi Medium|
30 nes_diso Q8N3U4 822 QSELLSFILDHVFIEQ HHHHHHHHHHHCCCCC c1a-4 boundary 0.0 Weak: -32.534 cosmic_phi_to_LIVMF Weak|
31 low complexity Q8N3U4 824 ELLSFILDHVFIEQ HHHHHHHHHCCCCC c2-5 boundary 0.0 Weak: -32.262 cosmic_phi_to_LIVMF
32 nes_diso Q8N3U4 860 KRRNLLAAFCKLIVYT HHHHHHHHHHHHHHCC c1a-4 boundary 0.0 Weak: -31.054 cosmic_phi Weak|
33 nes_diso Q8N3U4 919 LILSLQQLFNEMIQEN HHHHHHHHHHHHHHHC c1aR-4 boundary 0.0 Medium: -35.394 cosmic_phi Medium|
34 nes_diso Q8N3U4 919 LILSLQQLFNEMIQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -38.44 cosmic_phi Medium|
35 nes_diso Q8N3U4 947 GIKELARRFALTFGLDQ HHHHHHHHHHHHHCHHH c1c-5 boundary 0.0 Strong: -40.495 cosmic_spacer Strong|
36 nes_diso Q8N3U4 991 SHPPLNLAFLDILS CCCCCCCHHHHHHH c2-4 __ 0.0 Medium: -35.81 cosmic_phi_to_LIVMF Medium|
37 nes_diso Q8N3U4 995 LNLAFLDILSEFSSKL CCCHHHHHHHHHHHHH c1aR-4 boundary 0.0 Bad: -27.041 cosmic_phi_to_LIVMF
38 nes_diso Q8N3U4 1014 DKRTVYVYLEKFMTFQM HHHHHHHHHHHHCHHHC c1c-4 boundary 0.0 Bad: -28.914 cosmic_spacer
39 nes_diso Q8N3U4 1018 VYVYLEKFMTFQMSLRR HHHHHHHHCHHHCCCCC c1c-4 boundary 0.0 Weak: -31.161 cosmic_spacer Weak|
40 nes_diso Q8N3U4 1178 SEGRIEDLNEGMDFDT CCCCCCCCCCCCCCCC c1d-4 DISO 0.0 Bad: -24.307 cosmic_phi
41 nes_diso Q8N3U4 1185 LNEGMDFDTMDIDL CCCCCCCCCCCCCC c2-4 DISO 0.0 Weak: -32.739 cosmic_spacer Weak|
42 nes_diso Q8N3U4 1187 EGMDFDTMDIDLPPSK CCCCCCCCCCCCCCCC c1aR-4 DISO 0.0 Bad: -19.891 cosmic_spacer
43 nes_diso Q8N3U4 1217 PASIMDESVLGVSMFX HHHHCCCCCCCCCCC c1a-4 DISO 0.0 Weak: -31.161 cosmic_phi Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.