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Q8WVM7_STAG1 | Cohesin subunit SA-1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q8WVM7 81 EGEPVTLFEVVKLGK CCCCCCHHHHHHCCC c1b-4 boundary boundary|RFX5_DNA_bdg superfamily; 0.0 Weak: -32.911 cosmic_spacer Weak|
2 nes_diso Q8WVM7 113 RDIALLDLINFFIQCS HHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Weak: -31.759 cosmic_spacer Weak|
3 low complexity Q8WVM7 114 DIALLDLINFFIQC HHHHHHHHHHHHHH c2-5 boundary 0.0 Medium: -38.752 cosmic_spacer
4 nes_diso Q8WVM7 170 QWKKFRSNFCEFIGVLI HHHHHHHHHHHHHHHHH c1c-4 boundary boundary|STAG; 0.0 Medium: -35.631 cosmic_spacer Medium|
5 nes_ord Q8WVM7 199 MMDTVISLLTGLSD HHHHHHHHHHHCCC c3-4 ORD middle|STAG; 0.0 NA cosmic_phi_to_LIVMF
6 nes_diso Q8WVM7 225 AAMKLMTALVNVALNL HHHHHHHHHHHHHHHH c1a-4 boundary middle|STAG; 0.0 Medium: -33.588 cosmic_phi Medium|
7 nes_diso Q8WVM7 226 AMKLMTALVNVALNLSI HHHHHHHHHHHHHHHHH c1c-5 boundary middle|STAG; 0.0 Weak: -31.099 cosmic_phi_to_LIVMF Weak|
8 nes_diso Q8WVM7 255 RNKMIGKRANERLELLL HHHHHCCHHHHHHHHHH c1c-AT-4 __ boundary|STAG; 0.0 NA cosmic_spacer
9 nes_diso Q8WVM7 283 EIENMMNSIFKGIFVHR HHHHHHHHHHHHHHHHH c1c-5 boundary boundary|STAG; 0.0 Weak: -31.29 Weak|
10 nes_diso Q8WVM7 284 IENMMNSIFKGIFVHR HHHHHHHHHHHHHHHH c1a-4 boundary boundary|STAG; 0.0 Medium: -33.042 Medium|
11 nes_ord Q8WVM7 299 RYRDAIAEIRAICIEE HHHHCCHHHHHHHHHH c1a-AT-4 ORD boundary|STAG; 0.0 NA cosmic_spacer
12 nes_ord Q8WVM7 300 YRDAIAEIRAICIEE HHHCCHHHHHHHHHH c1b-4 ORD boundary|STAG; 0.0 NA cosmic_spacer
13 nes_ord Q8WVM7 306 EIRAICIEEIGVWM HHHHHHHHHHHHHH c2-5 ORD 0.0 NA cosmic_spacer
14 nes_ord Q8WVM7 370 FTNRFKDRIVSMTLDK HHHHHHHHHHHHHCCC c1a-4 ORD 0.0 NA cosmic_spacer
15 nes_ord Q8WVM7 385 KEYDVAVEAIRLVT CCHHHHHHHHHHHH c2-4 ORD 0.0 Bad: -25.227
16 nes_ord Q8WVM7 390 AVEAIRLVTLILHG HHHHHHHHHHHHHC c2-5 ORD 0.0 Medium: -38.307 cosmic_spacer
17 nes_diso Q8WVM7 460 PNGNLIRMLVLFFLES CHHHHHHHHHHHHHHC c1a-4 boundary 0.0 Strong: -41.765 cosmic_spacer Strong|
18 low complexity Q8WVM7 461 NGNLIRMLVLFFLE HHHHHHHHHHHHHH c2-4 boundary 0.0 Weak: -31.57 cosmic_spacer
19 nes_diso Q8WVM7 466 RMLVLFFLESELHEHA HHHHHHHHHCCCHHHH c1aR-4 boundary 0.0 Bad: -28.6 cosmic_spacer
20 nes_ord Q8WVM7 609 MEKHLDALLKQIKFVV HHHHHHHHHHHHHHHH c1a-4 ORD 0.0 NA cosmic_spacer
21 nes_ord Q8WVM7 612 HLDALLKQIKFVVE HHHHHHHHHHHHHH c3-4 ORD 0.0 NA cosmic_spacer
22 nes_ord Q8WVM7 620 IKFVVEKHVESDVLEAC HHHHHHHCCCHHHHHHH c1cR-4 ORD 0.0 NA cosmic_phi_to_LIVMF
23 nes_diso Q8WVM7 665 FVDRFNHSVEDLLQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -35.34 cosmic_phi_to_LIVMF Medium|
24 nes_diso Q8WVM7 687 DIYNVLSTLKRLTS HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -34.951 cosmic_spacer Medium|
25 nes_diso Q8WVM7 761 DLLVLRKTVKSFLAVCQ HHHHHHHHHHHHHHHHH c1c-5 boundary 0.0 Weak: -31.942 cosmic_spacer Weak|
26 nes_diso Q8WVM7 761 DLLVLRKTVKSFLA HHHHHHHHHHHHHH c3-4 boundary 0.0 Weak: -31.358 cosmic_spacer Weak|
27 nes_diso Q8WVM7 789 EQAFMLLCDLLMIF HHHHHHHHHHHHHH c2-4 boundary 0.0 Weak: -31.186 cosmic_spacer Weak|
28 nes_diso Q8WVM7 791 AFMLLCDLLMIFSHQL HHHHHHHHHHHHHHCC c1aR-4 boundary 0.0 Medium: -35.139 cosmic_spacer Medium|
29 low complexity Q8WVM7 791 AFMLLCDLLMIFSH HHHHHHHHHHHHHH c3-4 boundary 0.0 Weak: -32.839 cosmic_spacer
30 nes_diso Q8WVM7 821 PDTGLQSELLSFVMDH CCHHHHHHHHHHHHHH c1a-4 boundary 0.0 Weak: -30.278 cosmic_spacer Weak|
31 nes_diso Q8WVM7 825 LQSELLSFVMDHVFIDQ HHHHHHHHHHHHCCCCH c1c-4 boundary 0.0 Weak: -30.064 cosmic_phi_to_LIVMF Weak|
32 nes_diso Q8WVM7 826 QSELLSFVMDHVFIDQ HHHHHHHHHHHCCCCH c1a-4 boundary 0.0 Medium: -35.645 cosmic_spacer Medium|
33 low complexity Q8WVM7 828 ELLSFVMDHVFIDQ HHHHHHHHHCCCCH c2-5 boundary 0.0 Weak: -30.962 cosmic_spacer
34 nes_diso Q8WVM7 864 KRRNLLAAFSKLIIYD HHHHHHHHHHHHHHCC c1a-4 boundary 0.0 Strong: -41.111 cosmic_spacer Strong|
35 nes_diso Q8WVM7 923 LILSLQQLFNELVQEQ HHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Medium: -33.37 cosmic_spacer Medium|
36 nes_diso Q8WVM7 923 LILSLQQLFNELVQ HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -36.883 cosmic_spacer Medium|
37 nes_diso Q8WVM7 951 GIKELARRFALTFGLDQ HHHHHHHHHHHHHCCCH c1c-5 boundary 0.0 Medium: -38.468 cosmic_phi_to_LIVMF Medium|
38 nes_diso Q8WVM7 999 PNLAFLEVLSEFSSKL CCCHHHHHHHHHHHHC c1aR-4 boundary 0.0 Bad: -24.917 cosmic_phi
39 nes_diso Q8WVM7 1167 RKDRTGMNYMKVRT CCCCCCCCCCCCCC c2-AT-4 DISO 0.0 NA cosmic_spacer
40 nes_diso Q8WVM7 1174 NYMKVRTGVRHAVRGLM CCCCCCCCCCCHHCCCC c1cR-5 DISO 0.0 Bad: -28.699 cosmic_phi
41 nes_diso Q8WVM7 1190 MEEDAEPIFEDVMMSS CCCCCCHHHHHHHHCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
42 nes_diso Q8WVM7 1208 QLEDMNEEFEDTMVIDL HHHCCCCCCCCCCCCCC c1c-5 DISO 0.0 Strong: -45.561 cosmic_spacer Strong|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.