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Q92574_TSC1 | Hamartin   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q92574 3 QQANVGELLAMLDSPMLG CCCCHHHHHHHHHCCCCC c4-4 __ boundary|Hamartin; 0.0 Bad: -22.355 cosmic_spacer
2 nes_diso Q92574 10 LLAMLDSPMLGVRD HHHHHHCCCCCCHH c3-4 boundary boundary|Hamartin; 0.0 Bad: -27.26 cosmic_spacer
3 nes_diso Q92574 17 PMLGVRDDVTAVFK CCCCCHHHHHHHHH c3-4 boundary boundary|Hamartin; 0.0 Bad: -29.433 cosmic_spacer
4 nes_diso Q92574 38 GPMLVNTLVDYYLETSS HHHHHHHHHHHHHHCCC c1cR-4 boundary middle|Hamartin; 0.0 Bad: -26.197 cosmic_spacer_Pro
5 nes_ord Q92574 76 INEYVGKAATRLSILS HHHHHCCHHHHHHHHH c1a-AT-4 ORD middle|Hamartin; 0.0 NA cosmic_spacer
6 nes_ord Q92574 79 YVGKAATRLSILSLLG HHCCHHHHHHHHHHHH c1a-AT-5 ORD middle|Hamartin; 0.0 NA cosmic_spacer
7 nes_ord Q92574 85 TRLSILSLLGHVIRLQP HHHHHHHHHHHHHHHCC c1c-4 ORD middle|Hamartin; 0.0 NA cosmic_spacer
8 nes_ord Q92574 85 TRLSILSLLGHVIRLQ HHHHHHHHHHHHHHHC c1aR-5 ORD middle|Hamartin; 0.0 NA cosmic_spacer
9 nes_ord Q92574 88 SILSLLGHVIRLQP HHHHHHHHHHHHCC c3-4 ORD middle|Hamartin; 0.0 NA cosmic_spacer
10 nes_diso Q92574 108 SQAPLLPSLLKCLKMDT HCCCHHHHHHHHHHHCC c1c-4 boundary middle|Hamartin; 0.0 Bad: -21.967 cosmic_phi_to_LIVMF
11 nes_diso Q92574 109 QAPLLPSLLKCLKMDT CCCHHHHHHHHHHHCC c1a-4 boundary middle|Hamartin; 0.0 Strong: -43.401 cosmic_phi_to_LIVMF Strong|
12 nes_diso Q92574 116 LLKCLKMDTDVVVLTT HHHHHHHCCCHHHHHH c1a-AT-5 boundary middle|Hamartin; 0.0 NA cosmic_spacer
13 nes_diso Q92574 122 MDTDVVVLTTGVLVLIT HCCCHHHHHHHHHHHHH c1c-AT-4 boundary middle|Hamartin; 0.0 NA cosmic_spacer
14 nes_diso Q92574 122 MDTDVVVLTTGVLVLI HCCCHHHHHHHHHHHH c1a-AT-4 boundary middle|Hamartin; 0.0 NA cosmic_spacer
15 nes_diso Q92574 122 MDTDVVVLTTGVLVLI HCCCHHHHHHHHHHHH c1d-4 boundary middle|Hamartin; 0.0 NA cosmic_phi
16 nes_diso Q92574 123 DTDVVVLTTGVLVLITM CCCHHHHHHHHHHHHHH c1c-AT-4 boundary middle|Hamartin; 0.0 NA cosmic_spacer
17 nes_diso Q92574 123 DTDVVVLTTGVLVLIT CCCHHHHHHHHHHHHH c1a-AT-4 boundary middle|Hamartin; 0.0 NA cosmic_spacer
18 low complexity Q92574 125 DVVVLTTGVLVLITMLP CHHHHHHHHHHHHHHHC c1c-5 boundary middle|Hamartin; 0.0 Medium: -39.143 cosmic_phi
19 low complexity Q92574 125 DVVVLTTGVLVLIT CHHHHHHHHHHHHH c3-4 boundary middle|Hamartin; 0.0 Medium: -39.982 cosmic_phi
20 low complexity Q92574 132 GVLVLITMLPMIPQSG HHHHHHHHHCCCCCCC c1aR-4 boundary middle|Hamartin; 0.0 Bad: -24.531 cosmic_spacer
21 nes_diso Q92574 150 HLLDFFDIFGRLSSWC HHHHHHHHHHHHHHHH c1aR-4 boundary middle|Hamartin; 0.0 Medium: -33.567 cosmic_spacer Medium|
22 nes_diso Q92574 150 HLLDFFDIFGRLSS HHHHHHHHHHHHHH c3-4 boundary middle|Hamartin; 0.0 Medium: -36.835 cosmic_phi Medium|
23 nes_diso Q92574 173 AEVYLVHLHASVYALF HHHCHHHCCHHHHHHH c1aR-5 boundary middle|Hamartin; 0.0 Weak: -31.693 cosmic_phi Weak|
24 nes_diso Q92574 176 YLVHLHASVYALFH CHHHCCHHHHHHHH c3-4 boundary middle|Hamartin; 0.0 Bad: -26.761 cosmic_phi
25 nes_diso Q92574 183 SVYALFHRLYGMYP HHHHHHHHHHCCCC c3-4 boundary middle|Hamartin; 0.0 Bad: -28.797 cosmic_phi
26 nes_diso Q92574 215 TFEEVVKPMMEHVRIHP CHHHHHHHHHHHCCCCH c1c-5 boundary middle|Hamartin; 0.0 Weak: -32.23 cosmic_phi_to_LIVMF Weak|
27 nes_diso Q92574 216 FEEVVKPMMEHVRIHP HHHHHHHHHHHCCCCH c1a-4 boundary middle|Hamartin; 0.0 Bad: -29.95 cosmic_phi_to_LIVMF
28 nes_diso Q92574 246 RWKRLETHDVVIEC HHHCCCHHHHHHHH c2-AT-4 DISO middle|Hamartin; 0.0 NA cosmic_spacer
29 nes_diso Q92574 315 SRLMLLNMPGQLPQTL CCCCCCCCCCCCCCCC c1aR-4 DISO middle|Hamartin; 0.0 Bad: -27.893 cosmic_spacer
30 nes_diso Q92574 452 GSVTLSDLPGFLGDLA CCCCHHCCCCCCCCCC c1aR-5 DISO middle|Hamartin; 0.0 Bad: -27.886 cosmic_phi_to_LIVMF
31 nes_diso Q92574 455 TLSDLPGFLGDLAS CHHCCCCCCCCCCC c3-4 DISO middle|Hamartin; 0.0 Weak: -32.343 cosmic_phi_to_LIVMF Weak|
32 nes_diso Q92574 608 FEVALPKTAHHFVIRK CCCCCCCCCCCCCCCC c1a-AT-4 DISO middle|Hamartin; 0.0 NA cosmic_spacer
33 nes_diso Q92574 687 EIRTLRDQLLLLHN HHHHHHHHHHHHHH c3-4 DISO boundary|Hamartin; 0.0 Medium: -37.297 cosmic_spacer Medium|
34 nes_diso Q92574 771 MVTKLHSQIRQLQH HHHHHHHHHHHHHH c3-4 DISO boundary|Snf7 superfamily; 0.0 Bad: -28.231 cosmic_phi_to_LIVMF
35 nes_diso Q92574 824 TELLLSQVSQKLSNSE HHHHHHHHHHHHHHCH c1aR-4 DISO middle|Snf7 superfamily; 0.0 Weak: -30.324 cosmic_phi_to_LIVMF Weak|
36 nes_diso Q92574 844 QMEFLNRQLLVLGE HHHHHHHHHHHHHH c3-4 DISO middle|Snf7 superfamily; 0.0 Weak: -32.42 cosmic_phi_to_LIVMF Weak|
37 nes_diso Q92574 850 RQLLVLGEVNELYLEQ HHHHHHHHHHHHHHHH c1a-4 DISO boundary|Snf7 superfamily; 0.0 Weak: -31.398 cosmic_phi_to_LIVMF Weak|
38 nes_diso Q92574 946 SRYEAQKRITQVFELEI HHHHHHHHHHHHHHHHH c1c-AT-4 DISO 0.0 NA cosmic_spacer
39 nes_diso Q92574 954 ITQVFELEILDLYG HHHHHHHHHHHHHH c2-4 DISO 0.0 Weak: -32.645 cosmic_spacer Weak|
40 nes_diso Q92574 958 FELEILDLYGRLEKDG HHHHHHHHHHHHHHHH c1aR-4 DISO 0.0 Weak: -32.032 cosmic_spacer Weak|
41 nes_diso Q92574 1113 LSESLKTELGKDLGVEA CCHHHCCHHCCCCCCCC c1c-4 DISO 0.0 Medium: -36.466 cosmic_spacer Medium|
42 nes_diso Q92574 1140 PSPPTPDSVGQLHIMD CCCCCCCCCCCEEEEC c1a-AT-4 DISO 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.