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Q92889_XPF | DNA repair endonuclease XPF   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q92889 23 VLELLDTDGLVVCA HHHHHCCCCEEECC c2-AT-5 boundary 0.14 NA cosmic_spacer
2 nes_ord Q92889 37 RGLGADRLLYHFLQLHC CCCCHHHHHHHHHHHHC c1c-AT-4 ORD 0.0 NA
3 nes_diso Q92889 102 TQGGVIFATSRILVVDF HHCCEEECCCHHHHHHH c1c-AT-4 boundary boundary|rad1; 0.38 NA cosmic_spacer
4 nes_diso Q92889 102 TQGGVIFATSRILVVD HHCCEEECCCHHHHHH c1a-AT-4 boundary boundary|rad1; 0.43 NA cosmic_spacer
5 nes_diso Q92889 105 GVIFATSRILVVDFLT CEEECCCHHHHHHHHC c1a-AT-5 boundary boundary|rad1; 0.0 NA cosmic_spacer
6 nes_ord Q92889 112 RILVVDFLTDRIPSDL HHHHHHHHCCCCCHHH c1aR-4 ORD boundary|rad1; 0.0 NA cosmic_phi_to_LIVMF
7 nes_ord Q92889 119 LTDRIPSDLITGILVYR HCCCCCHHHCCEEEEEC c1c-4 ORD middle|rad1; 0.12 NA cosmic_spacer
8 nes_ord Q92889 157 KRGFIKAFTDNAVAFDT CCCCEEEECCCCCHHCC c1c-AT-4 ORD middle|rad1; 0.5 NA cosmic_spacer
9 nes_ord Q92889 174 GFCHVERVMRNLFVRK CCCHHHHHHHHHCCCE c1a-5 ORD middle|rad1; 0.0 NA cosmic_phi_to_LIVMF
10 nes_ord Q92889 221 TMLAIQTAILDILN HHHHHHHHHHHHHH c3-4 ORD middle|rad1; 0.0 Bad: -29.618 cosmic_phi_to_LIVMF
11 nes_diso Q92889 229 ILDILNACLKELKC HHHHHHHHHHHHHH c3-4 boundary middle|rad1; 0.0 Medium: -39.597 cosmic_spacer Medium|
12 nes_diso Q92889 243 HNPSLEVEDLSLEN HCCCCCCCCCCHHH c2-4 boundary middle|rad1; 0.0 Bad: -25.682 cosmic_spacer
13 nes_ord Q92889 277 LGAKTKSLVQDLKILR CCHHHHHHHHHHHHHH c1a-AT-4 ORD middle|rad1; 0.0 NA cosmic_spacer
14 nes_diso Q92889 287 DLKILRTLLQYLSQ HHHHHHHHHHHHHH c3-4 boundary middle|rad1; 0.0 Medium: -35.026 cosmic_phi_to_LIVMF Medium|
15 nes_diso Q92889 302 DCVTFLNLLESLRATE CHHHHHHHHHHHHHHH c1aR-4 boundary middle|rad1; 0.0 Weak: -32.401 cosmic_spacer Weak|
16 nes_diso Q92889 412 SDDRTCSQLRDYITLGA CCHHHHHHHHHHHHCCH c1c-AT-4 boundary middle|rad1; 0.0 NA cosmic_spacer
17 nes_diso Q92889 420 LRDYITLGAEAFLLRL HHHHHHCCHHHHHHHH c1a-AT-4 boundary middle|rad1; 0.0 NA cosmic_spacer
18 nes_diso Q92889 422 DYITLGAEAFLLRLYR HHHHCCHHHHHHHHHH c1a-AT-4 boundary middle|rad1; 0.0 NA cosmic_spacer
19 nes_diso Q92889 543 AFGILKEPLTIIHPLLGC HCCCCCCCEEEEEECCCC c4-5 boundary middle|rad1; 0.62 NA cosmic_spacer
20 nes_diso Q92889 543 AFGILKEPLTIIHP HCCCCCCCEEEEEE c3-4 boundary middle|rad1; 0.29 Bad: -25.102 cosmic_spacer
21 nes_diso Q92889 579 VLYDAELTFVRQLEIYR EEECCCCHHHHHHHHHH c1c-AT-5 boundary middle|rad1; 0.0 NA cosmic_spacer
22 nes_diso Q92889 581 YDAELTFVRQLEIYR ECCCCHHHHHHHHHH c1b-4 boundary middle|rad1; 0.0 NA cosmic_spacer
23 nes_diso Q92889 684 IVVDMREFRSELPSLI EEEECCCCCCCHHHHH c1aR-5 boundary middle|rad1; boundary|ERCC4; 0.0 Bad: -22.159 cosmic_phi
24 nes_diso Q92889 780 SSNDISSKLTLLTLHF CHHHHHHHHHHHHHHC c1a-4 boundary middle|rad1; boundary|ERCC4; 0.0 Bad: -28.992 cosmic_spacer
25 nes_diso Q92889 784 ISSKLTLLTLHFPR HHHHHHHHHHHCCC c2-4 boundary middle|rad1; boundary|ERCC4; 0.0 Bad: -26.972 cosmic_phi
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.