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Q93074_MED12 | Mediator of RNA polymerase II transcription subunit 12   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q93074 237 EKLAMFMFQDGMLDRH HHHHHHHHHCCCCCHH c1aR-4 boundary 0.0 Weak: -30.923 cosmic_spacer Weak|
2 nes_ord Q93074 254 FLTWVLECFEKIRP HHHHHHHHHHHCCC c3-4 ORD boundary|Med12-LCEWAV; 0.0 Bad: -23.871 cosmic_spacer
3 nes_diso Q93074 296 RLAYFCTRRLALQL HHHHHHHHHHHHHH c2-AT-5 boundary boundary|Med12-LCEWAV; 0.0 NA cosmic_spacer
4 nes_diso Q93074 340 STPSTPFSDLLMCP CCCCCHHHHHHHCH c2-AT-4 boundary middle|Med12-LCEWAV; 0.0 NA cosmic_spacer
5 nes_diso Q93074 358 LVFGLSCILQTILLCC HHHHHHHHHHHHHHHC c1a-5 boundary middle|Med12-LCEWAV; 0.0 Medium: -37.754 cosmic_phi_to_LIVMF Medium|
6 nes_diso Q93074 449 AGFTIGRVLHTLEVLD CCCHHHHHHHHHHHHH c1a-4 boundary middle|Med12-LCEWAV; 0.0 Medium: -37.835 cosmic_spacer Medium|
7 nes_diso Q93074 449 AGFTIGRVLHTLEVLD CCCHHHHHHHHHHHHH c1aR-5 boundary middle|Med12-LCEWAV; 0.0 Medium: -36.464 cosmic_phi Medium|
8 nes_diso Q93074 452 TIGRVLHTLEVLDS HHHHHHHHHHHHHH c3-4 boundary middle|Med12-LCEWAV; 0.0 Bad: -28.527 cosmic_phi
9 nes_diso Q93074 476 SLDSLCNRIFGLGP CHHHHHHHHHCCCC c3-4 boundary middle|Med12-LCEWAV; 0.0 Medium: -35.517 cosmic_spacer Medium|
10 nes_diso Q93074 587 ESERVEFFNLVLLF HHHHHHHHHHHHHH c2-4 boundary middle|Med12-LCEWAV; 0.0 Bad: -23.126 cosmic_spacer
11 nes_diso Q93074 589 ERVEFFNLVLLFCELI HHHHHHHHHHHHHHHH c1aR-5 boundary middle|Med12-LCEWAV; 0.0 Bad: -22.139
12 nes_diso Q93074 592 EFFNLVLLFCELIRHD HHHHHHHHHHHHHHCC c1aR-4 boundary middle|Med12-LCEWAV; 0.0 Strong: -40.59 Strong|
13 low complexity Q93074 592 EFFNLVLLFCELIR HHHHHHHHHHHHHH c3-4 boundary middle|Med12-LCEWAV; 0.0 Medium: -34.552
14 nes_diso Q93074 770 AIKKITKDILKVLN HHHHHHHHHHHHHH c3-4 boundary boundary|Med12-LCEWAV; 0.0 Bad: -27.45 cosmic_spacer
15 nes_diso Q93074 848 VSRNVLEQITSFALGM HHHHHHHHHHHHHCCC c1a-4 boundary 0.0 Bad: -26.958 cosmic_spacer
16 nes_ord Q93074 865 YHLPLVQHVQFIFDLME CCCCHHHHHHHHHHHHH c1c-4 ORD 0.0 Bad: -27.364 cosmic_spacer
17 nes_ord Q93074 866 HLPLVQHVQFIF CCCHHHHHHHHH c2-rev ORD 0.0 Bad: -21.143 cosmic_phi_to_LIVMF
18 nes_ord Q93074 869 LVQHVQFIFDLMEY HHHHHHHHHHHHHH c3-4 ORD 0.0 Medium: -33.023 cosmic_phi_to_LIVMF
19 nes_diso Q93074 872 HVQFIFDLMEYSLSISG HHHHHHHHHHHHCCHHH c1c-5 boundary 0.0 Medium: -37.438 cosmic_phi_to_LIVMF Medium|
20 nes_diso Q93074 873 VQFIFDLMEYSLSISG HHHHHHHHHHHCCHHH c1aR-4 boundary 0.0 Medium: -35.473 cosmic_phi_to_LIVMF Medium|
21 nes_diso Q93074 882 YSLSISGLIDFAIQLLN HHCCHHHHHHHHHHHHH c1c-4 boundary 0.0 Bad: -28.219 cosmic_spacer
22 nes_diso Q93074 888 GLIDFAIQLLNELSVVE HHHHHHHHHHHHHHHHH c1c-5 boundary 0.0 Medium: -39.537 cosmic_spacer Medium|
23 nes_diso Q93074 896 LLNELSVVEAELLLKS HHHHHHHHHHHHHHCC c1d-5 boundary 0.0 Medium: -36.274 cosmic_spacer Medium|
24 nes_diso Q93074 911 SSDLVGSYTTSLCLCI CCCHHHHHHHHHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
25 nes_diso Q93074 918 YTTSLCLCIVAVLR HHHHHHHHHHHHHH c2-4 boundary 0.0 NA cosmic_spacer
26 nes_ord Q93074 943 QMAQVFEGLCGVVK HHHHHHHHHHHHHH c3-4 ORD 0.0 Weak: -30.412 cosmic_phi
27 nes_diso Q93074 1050 RYSFVCNALMHVCVGH HHHHHHHHHHHHHHCC c1a-4 boundary 0.0 Weak: -32.665 cosmic_spacer Weak|
28 nes_ord Q93074 1106 GTCGFNDLLCNVDVSD CCCCCHHHHCCCCHHH c1a-4 ORD 0.0 Medium: -34.111 cosmic_spacer
29 nes_ord Q93074 1113 LLCNVDVSDLSFHD HHCCCCHHHCCHHH c2-5 ORD 0.0 Bad: -25.912 cosmic_spacer
30 nes_diso Q93074 1120 SDLSFHDSLATFVAILI HHCCHHHHHHHHHHHHH c1c-4 boundary 0.0 Medium: -33.442 cosmic_spacer Medium|
31 nes_diso Q93074 1216 VDGAVFAVLKAVFVLGD HHHHHHHHHHHHHHHCC c1c-4 boundary 0.0 Bad: -27.659 cosmic_phi_to_LIVMF
32 nes_diso Q93074 1216 VDGAVFAVLKAVFVLG HHHHHHHHHHHHHHHC c1a-4 boundary 0.0 Medium: -33.227 cosmic_phi Medium|
33 low complexity Q93074 1219 AVFAVLKAVFVLGD HHHHHHHHHHHHCC c3-4 boundary 0.0 Bad: -28.088 cosmic_phi
34 nes_diso Q93074 1264 GGRNISVETASLDVYA CCCCCCHHCCCHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
35 nes_diso Q93074 1375 MNSLLENIAKATIEVFQ HHHHHHHHHHHHHHHHH c1c-AT-4 boundary 0.0 NA cosmic_spacer
36 nes_diso Q93074 1424 GVWLVAPLIAKLPTSVQG CCEEECHHHHCCCHHHHH c4-5 boundary 0.0 Medium: -34.222 cosmic_phi_to_LIVMF Medium|
37 low complexity Q93074 1424 GVWLVAPLIAKLPT CCEEECHHHHCCCH c3-4 boundary 0.29 Medium: -33.79 cosmic_phi_to_LIVMF
38 nes_diso Q93074 1499 LLTSLYSQVHQIVN HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -25.142 cosmic_phi_to_LIVMF
39 nes_diso Q93074 1525 PKQLMHEALKLRLNLVG HHHHHHHHHHHHHHHHH c1c-4 boundary 0.0 Weak: -31.131 cosmic_spacer Weak|
40 nes_diso Q93074 1533 LKLRLNLVGGMFDTVQ HHHHHHHHHHHHHHHH c1aR-5 boundary 0.0 Bad: -27.197 cosmic_spacer
41 nes_diso Q93074 1536 RLNLVGGMFDTVQR HHHHHHHHHHHHHC c3-4 boundary 0.0 Weak: -32.561 cosmic_spacer Weak|
42 low complexity Q93074 1555 TEWAMLLLEIIISG HHHHHHHHHHHHHC c2-4 ORD 0.0 Weak: -30.947 cosmic_spacer
43 nes_ord Q93074 1558 AMLLLEIIISGTVDMQS HHHHHHHHHHCCCCCCC c1c-5 ORD 0.0 Bad: -24.982 cosmic_phi_to_LIVMF
44 nes_diso Q93074 1574 SNNELFTTVLDMLSVLI CHHHHHHHHHHHHHHHH c1c-4 boundary 0.0 Weak: -30.971 cosmic_phi_to_LIVMF Weak|
45 nes_diso Q93074 1575 NNELFTTVLDMLSVLI HHHHHHHHHHHHHHHH c1a-4 boundary 0.0 Medium: -37.673 cosmic_phi_to_LIVMF Medium|
46 nes_diso Q93074 1578 LFTTVLDMLSVLIN HHHHHHHHHHHHHH c3-4 boundary 0.0 Medium: -38.924 cosmic_phi_to_LIVMF Medium|
47 nes_diso Q93074 1579 FTTVLDMLSVLING HHHHHHHHHHHHHH c2-4 boundary 0.0 Weak: -31.456 cosmic_phi_to_LIVMF Weak|
48 nes_diso Q93074 1612 AYMNLAKKLQKELGERQ HHHHHHHHHHHHHCCCC c1cR-4 boundary 0.0 Bad: -25.469 cosmic_spacer
49 nes_diso Q93074 1874 YPGVLPTTMTGVMGLEP CCCCCCCCCCCCCCCCC c1c-4 DISO middle|Med12-PQL; 0.0 Medium: -37.505 cosmic_phi_to_LIVMF Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.