Q96AE4 | Far upstream element-binding protein 1

Q96AE4_FUBP1 | Far upstream element-binding protein 1 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	Q96AE4	103	EEYKVPDGMVGFIIGR	EEEEEECHHCCEEECC	c1a-4	boundary	boundary\|KH-I; boundary\|KH_1;	0.29	Weak: -32.486	cosmic_spacer E104G;P108L;	Weak\|
2	nes_diso	Q96AE4	207	TIKQLQERAGVKMVMIQ	HHHHHHHHHCCEEEECC	c1c-AT-5	boundary	boundary\|KH-I; boundary\|KH_1;	0.12	NA	cosmic_spacer I208V;R214L;G216A;V217I;
3	nes_diso	Q96AE4	278	IDVPIPRFAVGIVIGR	EEEEECCCCCEEEECC	c1a-AT-4	__	boundary\|KH-I; boundary\|KH_1; boundary\|KH-I; boundary\|KH_1;	0.29	NA	cosmic_spacer P281L;G288D;G292A;
4	nes_diso	Q96AE4	278	IDVPIPRFAVGIVIGR	EEEEECCCCCEEEECC	c1d-4	__	boundary\|KH-I; boundary\|KH_1; boundary\|KH-I; boundary\|KH_1;	0.29	NA	cosmic_spacer P281L;G288D;G292A;
5	nes_diso	Q96AE4	297	MIKKIQNDAGVRIQFKP	HHHHHHHHHCCCCCCCC	c1c-AT-5	boundary	boundary\|KH-I; boundary\|KH_1;	0.0	NA	cosmic_spacer G306D;K312E;
6	nes_diso	Q96AE4	416	PPPNADPNMKLFTIRG	CCCCCCCCEEEEEEEE	c1a-AT-4	boundary	boundary\|KH-I; boundary\|KH_1;	0.43	NA	cosmic_spacer P422S;M424I;M424V;I429V;R430C;R430H;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.