Q96T37 | RNA-binding protein 15

Q96T37_RBM15 | RNA-binding protein 15 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	Q96T37	170	KTLKISELGSQLSDEA	CEEEEECCCCCCCHHH	c1aR-4	boundary	boundary\|RRM1_RBM15; boundary\|RRM;	0.29	Bad: -23.019	cosmic_phi_to_LIVMF L181F;S182N;
2	nes_ord	Q96T37	190	LFHEFKRFGDVSVKI	HHHHHHHHCCEEEEE	c1b-5	ORD	middle\|RRM1_RBM15; boundary\|RRM;	0.14	Weak: -30.394	cosmic_spacer D199Y;
3	nes_beta_ord	Q96T37	196	RFGDVSVKISHLSG	HHCCEEEEEEEECC	c3-4	ORD	middle\|RRM1_RBM15; boundary\|RRM;	0.86	NA	cosmic_spacer D199Y;S205C;
4	nes_beta_diso	Q96T37	241	YDRPLKIEAVYVSR	CCCCCEEEEEECCC	c2-4	boundary	boundary\|RRM1_RBM15; boundary\|RRM;	0.71	NA	cosmic_spacer_Pro R243Q;E248K;A249P;
5	nes_beta_diso	Q96T37	372	ANRTLFLGNLDITV	CCCEEEEECCCCCC	c2-4	boundary	boundary\|RRM2_RBM15; boundary\|RRM_1;	0.71	Medium: -39.484	cosmic_spacer T375M;G379C;
6	nes_diso	Q96T37	374	RTLFLGNLDITVTESD	CEEEEECCCCCCCHHH	c1aR-4	boundary	boundary\|RRM2_RBM15; boundary\|RRM_1;	0.29	Weak: -31.063	cosmic_spacer G379C;T386M;	Weak\|
7	nes_diso	Q96T37	386	TESDLRRAFDRFGVIT	CHHHHHHHHHHHCCEE	c1a-4	boundary	boundary\|RRM2_RBM15; boundary\|RRM_1;	0.0	Medium: -38.735	cosmic_spacer D395H;R396C;	Medium\|
8	nes_ord	Q96T37	393	AFDRFGVITEVDIKR	HHHHHCCEEEEEEEC	c1b-5	ORD	middle\|RRM2_RBM15; boundary\|RRM_1;	0.57	NA	cosmic_spacer D395H;R396C;
9	nes_ord	Q96T37	415	TYGFLKFENLDMSH	EEEEEEECCHHHHH	c2-4	ORD	middle\|RRM2_RBM15; boundary\|RRM_1;	0.57	NA	cosmic_phi_to_LIVMF L424F;
10	nes_ord	Q96T37	426	MSHRAKLAMSGKIIIRN	HHHHHHHHHCCCEECCE	c1c-AT-4	ORD	boundary\|RRM2_RBM15; boundary\|RRM_1; boundary\|RRM; boundary\|RRM3_RBM15;	0.0	NA	cosmic_spacer M434I;K437I;R441W;R441Q;
11	nes_ord	Q96T37	467	PLAALAREFDRFGT	CHHHHHHHHHHHCC	c3-4	ORD	boundary\|RRM2_RBM15; boundary\|RRM_1; boundary\|RRM; boundary\|RRM3_RBM15;	0.0	NA	cosmic_spacer R473Q;D476G;
12	nes_diso	Q96T37	504	HAAWTHMRGFPLGG	HHHHHHCCCCCCCC	c2-AT-4	boundary	boundary\|RRM; boundary\|RRM3_RBM15;	0.0	NA	cosmic_spacer W507L;W507G;G516C;
13	nes_beta_diso	Q96T37	799	FPSNMHLLQGDLQVAS	CCCEEEEEECCHHHHH	c1d-4	boundary	boundary\|SPOC;	0.71	NA	cosmic_spacer G808S;
14	nes_diso	Q96T37	818	VEGSTGGKVAQLKITQ	CCCCCCCCCCCCEEEE	c1a-AT-4	boundary	middle\|SPOC;	0.0	NA	cosmic_spacer Q828E;
15	nes_diso	Q96T37	823	GGKVAQLKITQRLRLDQ	CCCCCCCEEEEEECCCC	c1c-AT-4	boundary	middle\|SPOC;	0.62	NA	cosmic_spacer Q828E;
16	nes_diso	Q96T37	838	DQPKLDEVTRRIKVAG	CCHHHHHHHHHHHHCC	c1a-AT-4	boundary	middle\|SPOC;	0.0	NA	cosmic_spacer R848H;
17	nes_diso	Q96T37	838	DQPKLDEVTRRIKVAG	CCHHHHHHHHHHHHCC	c1d-4	boundary	middle\|SPOC;	0.0	NA	cosmic_spacer R848H;
18	nes_diso	Q96T37	897	QKQAAGVISLPVGG	HHCCCEEEECCCCC	c2-AT-4	boundary	middle\|SPOC;	0.57	NA	cosmic_spacer Q899R;G902R;P907S;G909V;
19	nes_beta_diso	Q96T37	944	EEDYLVMIIVRGFGFQI	CCCEEEEEEECCCCCCC	c1c-4	boundary	boundary\|SPOC;	0.75	NA	cosmic_spacer Y947N;R954H;
20	nes_beta_diso	Q96T37	945	EDYLVMIIVRGFGFQI	CCEEEEEEECCCCCCC	c1a-4	boundary	boundary\|SPOC;	0.71	NA	cosmic_spacer Y947N;R954H;
21	low complexity	Q96T37	947	YLVMIIVRGFGFQI	EEEEEEECCCCCCC	c2-5	boundary	boundary\|SPOC;	0.57	NA	cosmic_spacer R954H;
22	nes_diso	Q96T37	948	LVMIIVRGFGFQIGVRY	EEEEEECCCCCCCCCCH	c1c-5	boundary	boundary\|SPOC;	0.25	Strong: -49.034	cosmic_spacer R954H;	Strong\|

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.