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Q99102_MUC4 | Mucin-4   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso Q99102 8 RVPWVSLSCLCLCL CCCCCCCCCCCCCC c2-5 DISO boundary|DUF2722 superfamily; 0.0 Weak: -32.844 Weak|
2 nes_diso Q99102 10 PWVSLSCLCLCLLPHV CCCCCCCCCCCCCCCC c1aR-4 DISO boundary|DUF2722 superfamily; 0.0 Bad: -27.137
3 nes_diso Q99102 15 SCLCLCLLPHVVPGTT CCCCCCCCCCCCCCCC c1aR-4 DISO boundary|DUF2722 superfamily; 0.0 Bad: -23.705
4 nes_diso Q99102 124 MTTSFPSSVTNTLMMTS CCCCCCCCCCCCCCCCC c1c-4 DISO boundary|DUF2722 superfamily; boundary|PHA03273 superfamily; 0.0 Weak: -32.169 cosmic_spacer Weak|
5 nes_diso Q99102 422 TISAITSKVSTIWW CCCCEECCCCCCCC c3-4 DISO middle|KAR9 superfamily; 0.29 Medium: -37.541 Medium|
6 nes_diso Q99102 533 TIPRVPSKVSAIGE CCCCCCCEEECCCC c3-4 DISO boundary|KAR9 superfamily; 0.43 Weak: -32.899 Weak|
7 nes_beta_diso Q99102 1081 GAGDLEFVRRTVDFTS CCCCEEEEEEECCCCC c1d-4 boundary 1.0 NA cosmic_spacer
8 nes_diso Q99102 1103 TGFPLGSSLRDSLYFTD CCCCCCCCCCCEEEECC c1c-4 boundary 0.12 Bad: -28.269
9 nes_ord Q99102 1449 TLDGVSYTFNGLGD CCCCCEEEECCCEE c3-4 ORD boundary|AMOP; boundary|VWD; 0.57 NA
10 nes_beta_diso Q99102 1539 GQETFNATGVLLSR CCEEEECEEEEEEC c2-AT-4 boundary middle|VWD; 0.86 NA
11 nes_beta_diso Q99102 1561 FDGWATVSVIALSN ECCCEEEEEEEECC c2-AT-4 boundary middle|VWD; 0.86 NA
12 nes_diso Q99102 1619 EEMLFHFGMTWQINGTG HHHHHHHHCCCCCCCCC c1cR-4 boundary boundary|VWD; 0.0 Bad: -26.897
13 nes_diso Q99102 1922 PTVNLELPLRVIQLLL CCCCCCCCCEEEEEEE c1a-4 boundary 0.29 Bad: -29.247
14 nes_diso Q99102 1924 VNLELPLRVIQLLLSE CCCCCCCEEEEEEEEC c1a-4 boundary 0.57 NA
15 nes_diso Q99102 1924 VNLELPLRVIQLLL CCCCCCCEEEEEEE c2-4 boundary 0.43 Weak: -31.907 Weak|
16 low complexity Q99102 1926 LELPLRVIQLLLSE CCCCCEEEEEEEEC c2-4 boundary 0.71 NA
17 nes_diso Q99102 1948 VNASVAYRLGTLDMRA HCHHHHHHHCCHHHHH c1a-4 DISO 0.0 Strong: -42.063 Strong|
18 nes_diso Q99102 2038 SGEDVRDVTALNVST CHHHCCCCEECCHHH c1b-4 boundary 0.29 Bad: -27.236
19 nes_diso Q99102 2046 TALNVSTLKAYFRCDG EECCHHHHHHHCCCCC c1aR-4 boundary 0.0 Bad: -25.437
20 nes_TM Q99102 2115 HCEHLSMKLDAFFGIFF CCCCEEECCCCCHHHCC c1c-4 ORD 0.38 Medium: -39.473
21 nes_TM Q99102 2119 LSMKLDAFFGIFFGAL EEECCCCCHHHCCCCH c1aR-4 ORD 0.0 Medium: -36.82
22 nes_TM Q99102 2126 FFGIFFGALGGLLLLG CHHHCCCCHHCHHHHC c1a-5 ORD 0.0 Bad: -26.009
23 nes_TM Q99102 2134 LGGLLLLGVGTFVVLRF HHCHHHHCCCCCCCCCC c1c-4 boundary 0.0 Bad: -25.602
24 nes_TM Q99102 2134 LGGLLLLGVGTFVVLR HHCHHHHCCCCCCCCC c1a-4 boundary 0.0 Bad: -27.893
25 nes_TM Q99102 2135 GGLLLLGVGTFVVLRF HCHHHHCCCCCCCCCC c1aR-4 boundary 0.0 Bad: -26.377
26 low complexity Q99102 2136 GLLLLGVGTFVVLR CHHHHCCCCCCCCC c2-5 boundary 0.0 Bad: -27.54
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.