Q99728 | BRCA1-associated RING domain protein 1

Q99728_BARD1 | BRCA1-associated RING domain protein 1 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	Q99728	84	PVCYTPAWIQDLKINR	CCCCCCCCHHHCCHHH	c1a-AT-5	boundary	boundary\|zf-RING_6;	0.0	NA	cosmic_spacer V85M;P89L;P89A;P89S;
2	nes_diso	Q99728	93	QDLKINRQLDSMIQLCS	HHCCHHHHHHHHHHHHH	c1c-4	boundary	boundary\|zf-RING_6;	0.0	Weak: -32.064	cosmic_spacer D102E;M104I;	Weak\|
3	nes_diso	Q99728	103	SMIQLCSKLRNLLH	HHHHHHHHHHHHHC	c3-4	boundary	boundary\|zf-RING_6;	0.0	Weak: -30.798	cosmic_phi_to_LIVMF M104I;	Weak\|
4	nes_diso	Q99728	268	ESECFGSLTEVSLPL	CCCCCCCCCCCCCCH	c1b-4	DISO		0.0	Medium: -39.502	cosmic_spacer P281S;	Medium\|
5	nes_diso	Q99728	430	TLLHIASIKGDIPSVE	CHHHHHHHHCCHHHHH	c1aR-5	boundary	boundary\|Ank_2;	0.0	Bad: -20.919	cosmic_spacer A435V;D440G;
6	nes_ord	Q99728	470	NHGHLKVVELLLQH	HCCHHHHHHHHHHC	c2-4	ORD	middle\|Ank_2;	0.0	Bad: -25.814	cosmic_spacer H471Y;G472E;H473L;L480S;
7	nes_diso	Q99728	503	KNGHVDIVKLLLSY	HCCCHHHHHHHHHC	c2-4	boundary	boundary\|Ank_2;	0.0	Bad: -22.288	cosmic_spacer D508V;S515F;
8	nes_diso	Q99728	596	KYTEFDSTVTHVVVPG	CCCCCCCCCCEECCCC	c1a-4	boundary	middle\|BRCT_Bard1_rpt1; middle\|BRCT;	0.14	Bad: -15.803	cosmic_phi_to_LIVMF F600L;D601G;D601H;S602I;V604I;H606D;V609F;
9	nes_diso	Q99728	610	PGDAVQSTLKCMLGILN	CCCCCCCCHHHHHHHHC	c1c-4	boundary	boundary\|BRCT_Bard1_rpt1; boundary\|BRCT;	0.0	Bad: -29.901	cosmic_spacer Q615E;
10	nes_diso	Q99728	759	PSSWFIDCVMSFELLP	ECCHHHHHHHHCCCEE	c1a-4	boundary	boundary\|BRCT; boundary\|BRCT_Bard1_rpt2;	0.0	Medium: -33.263	cosmic_phi S760L;F763V;V767A;	Medium\|

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.